| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is invA [H]
Identifier: 34498085
GI number: 34498085
Start: 2836202
End: 2838262
Strand: Reverse
Name: invA [H]
Synonym: CV_2630
Alternate gene names: 34498085
Gene position: 2838262-2836202 (Counterclockwise)
Preceding gene: 34498086
Following gene: 34498084
Centisome position: 59.74
GC content: 66.42
Gene sequence:
>2061_bases CTGAACTCCCTGCTGAACGGCGCGCGATCGCGCCCGGAACTGCTGATCCTGCTGTTGATGGTGATGATCATCGCGATGCT GATCATCCCGCTGCCCACCTACCTGGTGGACTTCCTGATCGGCCTGAACATCGTGCTGGCGGTGCTGGTGTTCATGGGCT CGTTCTACATCGACCGCATCCTCAGCTTTTCCACCTTCCCGTCGGTGTTGCTGATCACCACGCTGTTCCGCCTGGCGCTG TCCATCAGCACCAGCCGGCTGATCCTGATCGAGGCCGACGCCGGCGAGATCATCGCCACCTTCGGCCAGTTCGTGATCGG CGACAGCCTGGCGGTGGGCTTCGTGGTGTTCTCCATCGTCACCGTGGTCCAGTTCATCGTGATCACCAAGGGGTCGGAGC GGGTGGCCGAAGTGGCGGCGCGCTTCTCGCTGGACGGCATGCCCGGCAAGCAGATGAGCATCGACGCCGACCTCAAGGCC GGCATCATCGACGCCGACGGCGCGCGCGAGCGCCGCAGCGTGCTGGAGCGCGAGAGCCAGCTGTACGGCTCCTTCGACGG CGCGATGAAGTTCATCAAGGGCGACGCCATCGCCGGCATCATCATCATTTTCGTCAACTTCATCGGCGGCATCGCGGTGG GCATGACCCAGCACGGCATGGACCTGTCCGCCGCCTTGTCCACCTACACGATGCTCACCATCGGCGACGGCCTGGTCGCG CAGATCCCGGCGCTGCTGATCGCCATCAGCGCCGGCTTCATCGTCACCCGCGTCAACGGCGACAGCGACAACATGGGCCG CAACATCATGAGCCAGCTGCTGGGCAATCCCTTCGTGCTGGTGGTGACCGCGGTGCTGGCGCTGGCGGTGGGCATGCTGC CGGGCTTCCCGCTGATCGTGTTCCTGATCCTGGCCGCCGCGCTGGGCGGCCTGTTCTATTACAAGCGACGCGCCGCCGCC GGCAAGCCCGCGCCGGGCATGCCGGCCCAGGCGGCCAAGGGCGGTTCGGCTCCGGGCGACGCGGCGAGGACGGGCGGGGC GGACAGTTCGCTCGGCCTGATAGGCAATCTGGACAAGGTGGCGGCGGAAACCGTGCCGCTGATCTTGCTGGTGCCGGCCA GCCGGCGCGCGGCGCTGGAGCAGGCGCAGCTGGCCGAGCGCCTGCGCAGCCAGTTTTTCATCGACTACGGCGTGCGGCTG CCGGACATGCTGCTGCGCGAAGCCGAGGGCATGGACGACAACCGGGTGGCGGTGCTGATCAACGAGATCCGCGCCGATGA ATTCCCGATCCGCTTCGACCTCGCGCGCGTGGTCAATCCCAGCGAGGAAATCCTGGCGCTGGACGTGCAGCCGGTGCTGG AGCGCGAGTGCGTGTGGGTGAGGCCGGAGGACGGCGACCGGCTGGCCAAGCTGGGCTACCAGCTGCGCCCGGCGCTGGAC GAGCTCTACCACTGCCTGGCGGCGCTGCTGGCCCGCCACGTCAACGAGTATTTCGGCGTCCAGGAAACCAAGCACATGCT GGACCAGCTGGAGGGCAAGTACCCCGACCTGCTGAAGGAGGTGCTGCGCCATGCCACCGTGCAGCGCATCGCCGAAGTGC TGCAGCGCCTGCTGGCGGAACGCATCTCGGTGCGCAACATGAAGCTGATCATGGAGGCGCTGGCGCTGTGGGCGCCGCGC GAGAAAGACGTGATCAACCTGGTCGAACACGTCCGCGGCGCGCTGGCCCGCTACATCTGCCACAAATTCTCGGCCGGCGG CGAGCTGCGGGCGGTGATGGTGTCGGCAGAAGTGGAGGACATGGTGCGCAAGGGCGTGCGCCAGACCTCGGCCGGCGCCT TCCTCAACCTGGAGCCGGCGGCGTCCGACGAGCTGATGGACCTGTTCGCGCTGGGCCTGGAGGGCCTGGGCGTCGCCTAC AAGGACATGGTGCTGCTCGCCTCGGTCGACGTGCGGCGCTTCATCAAGAAATTGGTCGAAACCCGCTTCCGCGAGCTGGA AGTGGTGTCTTTCGGCGAAATCACCGACAGCGTGTCGGTCAATGTGATCAAAACTATCTGA
Upstream 100 bases:
>100_bases TACCGGCATGAACAGATAGAGCGGCGGCGCGAAAACTGACGCTGTTTGACGAACAACCCGGCGCATGGGCGCCTGTTTGC GATTGGATGGACTTCTGGTG
Downstream 100 bases:
>100_bases CGAGGACGCAAGCCCATGTTCAAACAGGATATCGCCCAACTGGTCCGTTCAGCGCTGCAGGAAAGCGGCTGCGACCCCAG CCTGCTGGGCCCGCTGGACA
Product: invasion protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 686; Mature: 686
Protein sequence:
>686_residues MNSLLNGARSRPELLILLLMVMIIAMLIIPLPTYLVDFLIGLNIVLAVLVFMGSFYIDRILSFSTFPSVLLITTLFRLAL SISTSRLILIEADAGEIIATFGQFVIGDSLAVGFVVFSIVTVVQFIVITKGSERVAEVAARFSLDGMPGKQMSIDADLKA GIIDADGARERRSVLERESQLYGSFDGAMKFIKGDAIAGIIIIFVNFIGGIAVGMTQHGMDLSAALSTYTMLTIGDGLVA QIPALLIAISAGFIVTRVNGDSDNMGRNIMSQLLGNPFVLVVTAVLALAVGMLPGFPLIVFLILAAALGGLFYYKRRAAA GKPAPGMPAQAAKGGSAPGDAARTGGADSSLGLIGNLDKVAAETVPLILLVPASRRAALEQAQLAERLRSQFFIDYGVRL PDMLLREAEGMDDNRVAVLINEIRADEFPIRFDLARVVNPSEEILALDVQPVLERECVWVRPEDGDRLAKLGYQLRPALD ELYHCLAALLARHVNEYFGVQETKHMLDQLEGKYPDLLKEVLRHATVQRIAEVLQRLLAERISVRNMKLIMEALALWAPR EKDVINLVEHVRGALARYICHKFSAGGELRAVMVSAEVEDMVRKGVRQTSAGAFLNLEPAASDELMDLFALGLEGLGVAY KDMVLLASVDVRRFIKKLVETRFRELEVVSFGEITDSVSVNVIKTI
Sequences:
>Translated_686_residues MNSLLNGARSRPELLILLLMVMIIAMLIIPLPTYLVDFLIGLNIVLAVLVFMGSFYIDRILSFSTFPSVLLITTLFRLAL SISTSRLILIEADAGEIIATFGQFVIGDSLAVGFVVFSIVTVVQFIVITKGSERVAEVAARFSLDGMPGKQMSIDADLKA GIIDADGARERRSVLERESQLYGSFDGAMKFIKGDAIAGIIIIFVNFIGGIAVGMTQHGMDLSAALSTYTMLTIGDGLVA QIPALLIAISAGFIVTRVNGDSDNMGRNIMSQLLGNPFVLVVTAVLALAVGMLPGFPLIVFLILAAALGGLFYYKRRAAA GKPAPGMPAQAAKGGSAPGDAARTGGADSSLGLIGNLDKVAAETVPLILLVPASRRAALEQAQLAERLRSQFFIDYGVRL PDMLLREAEGMDDNRVAVLINEIRADEFPIRFDLARVVNPSEEILALDVQPVLERECVWVRPEDGDRLAKLGYQLRPALD ELYHCLAALLARHVNEYFGVQETKHMLDQLEGKYPDLLKEVLRHATVQRIAEVLQRLLAERISVRNMKLIMEALALWAPR EKDVINLVEHVRGALARYICHKFSAGGELRAVMVSAEVEDMVRKGVRQTSAGAFLNLEPAASDELMDLFALGLEGLGVAY KDMVLLASVDVRRFIKKLVETRFRELEVVSFGEITDSVSVNVIKTI >Mature_686_residues MNSLLNGARSRPELLILLLMVMIIAMLIIPLPTYLVDFLIGLNIVLAVLVFMGSFYIDRILSFSTFPSVLLITTLFRLAL SISTSRLILIEADAGEIIATFGQFVIGDSLAVGFVVFSIVTVVQFIVITKGSERVAEVAARFSLDGMPGKQMSIDADLKA GIIDADGARERRSVLERESQLYGSFDGAMKFIKGDAIAGIIIIFVNFIGGIAVGMTQHGMDLSAALSTYTMLTIGDGLVA QIPALLIAISAGFIVTRVNGDSDNMGRNIMSQLLGNPFVLVVTAVLALAVGMLPGFPLIVFLILAAALGGLFYYKRRAAA GKPAPGMPAQAAKGGSAPGDAARTGGADSSLGLIGNLDKVAAETVPLILLVPASRRAALEQAQLAERLRSQFFIDYGVRL PDMLLREAEGMDDNRVAVLINEIRADEFPIRFDLARVVNPSEEILALDVQPVLERECVWVRPEDGDRLAKLGYQLRPALD ELYHCLAALLARHVNEYFGVQETKHMLDQLEGKYPDLLKEVLRHATVQRIAEVLQRLLAERISVRNMKLIMEALALWAPR EKDVINLVEHVRGALARYICHKFSAGGELRAVMVSAEVEDMVRKGVRQTSAGAFLNLEPAASDELMDLFALGLEGLGVAY KDMVLLASVDVRRFIKKLVETRFRELEVVSFGEITDSVSVNVIKTI
Specific function: Involved in the invasion of the cells of the intestinal epithelium. Could be involved in the translocation of the invE protein [H]
COG id: COG4789
COG function: function code U; Type III secretory pathway, component EscV
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family [H]
Homologues:
Organism=Escherichia coli, GI1788187, Length=686, Percent_Identity=34.6938775510204, Blast_Score=374, Evalue=1e-105,
Paralogues:
None
Copy number: 10-20 (rich media) [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001712 - InterPro: IPR006302 [H]
Pfam domain/function: PF00771 FHIPEP [H]
EC number: NA
Molecular weight: Translated: 74609; Mature: 74609
Theoretical pI: Translated: 5.34; Mature: 5.34
Prosite motif: PS00994 FHIPEP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNSLLNGARSRPELLILLLMVMIIAMLIIPLPTYLVDFLIGLNIVLAVLVFMGSFYIDRI CCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LSFSTFPSVLLITTLFRLALSISTSRLILIEADAGEIIATFGQFVIGDSLAVGFVVFSIV HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHH TVVQFIVITKGSERVAEVAARFSLDGMPGKQMSIDADLKAGIIDADGARERRSVLERESQ HHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCEEECCCCCCCEECCCCCHHHHHHHHHHHH LYGSFDGAMKFIKGDAIAGIIIIFVNFIGGIAVGMTQHGMDLSAALSTYTMLTIGDGLVA HHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHH QIPALLIAISAGFIVTRVNGDSDNMGRNIMSQLLGNPFVLVVTAVLALAVGMLPGFPLIV HHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHH FLILAAALGGLFYYKRRAAAGKPAPGMPAQAAKGGSAPGDAARTGGADSSLGLIGNLDKV HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCHHHH AAETVPLILLVPASRRAALEQAQLAERLRSQFFIDYGVRLPDMLLREAEGMDDNRVAVLI HHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCEEEE NEIRADEFPIRFDLARVVNPSEEILALDVQPVLERECVWVRPEDGDRLAKLGYQLRPALD HHHCCCCCCHHHHHHHHCCCCHHEEEECCCHHHCCCEEEECCCCCCHHHHHCHHHHHHHH ELYHCLAALLARHVNEYFGVQETKHMLDQLEGKYPDLLKEVLRHATVQRIAEVLQRLLAE HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH RISVRNMKLIMEALALWAPREKDVINLVEHVRGALARYICHKFSAGGELRAVMVSAEVED HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHH MVRKGVRQTSAGAFLNLEPAASDELMDLFALGLEGLGVAYKDMVLLASVDVRRFIKKLVE HHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH TRFRELEVVSFGEITDSVSVNVIKTI HHHHHHHEEECCCCCCCCCEEEEECC >Mature Secondary Structure MNSLLNGARSRPELLILLLMVMIIAMLIIPLPTYLVDFLIGLNIVLAVLVFMGSFYIDRI CCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LSFSTFPSVLLITTLFRLALSISTSRLILIEADAGEIIATFGQFVIGDSLAVGFVVFSIV HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHH TVVQFIVITKGSERVAEVAARFSLDGMPGKQMSIDADLKAGIIDADGARERRSVLERESQ HHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCEEECCCCCCCEECCCCCHHHHHHHHHHHH LYGSFDGAMKFIKGDAIAGIIIIFVNFIGGIAVGMTQHGMDLSAALSTYTMLTIGDGLVA HHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHH QIPALLIAISAGFIVTRVNGDSDNMGRNIMSQLLGNPFVLVVTAVLALAVGMLPGFPLIV HHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHH FLILAAALGGLFYYKRRAAAGKPAPGMPAQAAKGGSAPGDAARTGGADSSLGLIGNLDKV HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCHHHH AAETVPLILLVPASRRAALEQAQLAERLRSQFFIDYGVRLPDMLLREAEGMDDNRVAVLI HHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCEEEE NEIRADEFPIRFDLARVVNPSEEILALDVQPVLERECVWVRPEDGDRLAKLGYQLRPALD HHHCCCCCCHHHHHHHHCCCCHHEEEECCCHHHCCCEEEECCCCCCHHHHHCHHHHHHHH ELYHCLAALLARHVNEYFGVQETKHMLDQLEGKYPDLLKEVLRHATVQRIAEVLQRLLAE HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH RISVRNMKLIMEALALWAPREKDVINLVEHVRGALARYICHKFSAGGELRAVMVSAEVED HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHH MVRKGVRQTSAGAFLNLEPAASDELMDLFALGLEGLGVAYKDMVLLASVDVRRFIKKLVE HHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH TRFRELEVVSFGEITDSVSVNVIKTI HHHHHHHEEECCCCCCCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11677608; 12644504 [H]