Click here to switch to the map view.

The map label for this gene is ykgD [C]

Identifier: 34497947

GI number: 34497947

Start: 2682924

End: 2683769

Strand: Reverse

Name: ykgD [C]

Synonym: CV_2492

Alternate gene names: 34497947

Gene position: 2683769-2682924 (Counterclockwise)

Preceding gene: 34497952

Following gene: 34497946

Centisome position: 56.49

GC content: 66.19

Gene sequence:

>846_bases
GTGGCTGAGGCATGTGTCGACAGGCTGGATGCGTTGCTGAGTCGCTTTCCGGTTCGCGCGCGAATGTTCCATTCCGGCGC
CCTGTGCGGCGTCACGGATTTTTCCCAGTCAGGCGAAGGCGGCCAGTTGCATCTGATCCGGGCGGGGAGGCTGGATGTCA
TCCATTCGGGGCGATCGGCAGGCCTGGAGGTGAACGTGCCCAGCCTGCTGTTTTACCCGCGCCGTATGCCGCGCCGCTTC
GTGCCGGATCAGCGGAACCGGGCCGATCTGGTCTGCGCCGAGCTGCATTTCGATGGCGGAGCGGAGAACCCCATCGTGGC
GGCATTGCCGGAGGTCGTTTTCCTGCCGCTGGACAGCATCGCCGGCGCCGGAGCTGTGCTGGCGACCCTGTTCGACGAAG
CGTTCAGCGACAATTGCGGCCGGCATGTCGTGGTCGACAGGCTGTTCGAGGTCGTGCTGGTTCAATTGCTGCGGCATCTG
CTTGAAGCTGGCGAGCTGCGCGCCGGCATGCTGGCGGGCCTGGCGCATTCCAAGCTGAGAAAAGCGCTGGCGGCGATGCA
CGAGCAGCCGGCGCGGGAGTGGTCGCTGGCGAGGCTGGCTGGCATCGCGGGAATGTCGCGCAGCGTTTTCGCCGGCAACT
TTCGCGACATCGTCGGCTGCACGGCCGGCGCTTACCTGCAAGGCTGGCGGATCAGGCTGGCGCAGCAGGCATTGAGGCAG
GGAAAGCGGTTGAAGATGATCGCGATCGAGGTCGGCTACGGCAGCGAAGCCGCGTTGTCCAGAGCGTTCAAGGCGCAATG
CGGCGTCACGCCGCGGGCGTGGCGGCAAGCGCTGGCCGCGGATTGA

Upstream 100 bases:

>100_bases
ATGGTTGGTGGGCTTAAGCCGTTTGGCTGGAGAAACTTTATGCCAAGCAAAATGACGATAAGCTGCATAGGATCCTGAAA
ATTTGATAAGGAGTCCTGAT

Downstream 100 bases:

>100_bases
TGTCCGTGGCTGACTGCGGGCGCCCAGGCAGGGTGGTCGAAGCGGAGCGGCATGACATGCGGGCATGGTGACAGTAGGGC
AGGCTGGTGCTAATCTTGAC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 281; Mature: 280

Protein sequence:

>281_residues
MAEACVDRLDALLSRFPVRARMFHSGALCGVTDFSQSGEGGQLHLIRAGRLDVIHSGRSAGLEVNVPSLLFYPRRMPRRF
VPDQRNRADLVCAELHFDGGAENPIVAALPEVVFLPLDSIAGAGAVLATLFDEAFSDNCGRHVVVDRLFEVVLVQLLRHL
LEAGELRAGMLAGLAHSKLRKALAAMHEQPAREWSLARLAGIAGMSRSVFAGNFRDIVGCTAGAYLQGWRIRLAQQALRQ
GKRLKMIAIEVGYGSEAALSRAFKAQCGVTPRAWRQALAAD

Sequences:

>Translated_281_residues
MAEACVDRLDALLSRFPVRARMFHSGALCGVTDFSQSGEGGQLHLIRAGRLDVIHSGRSAGLEVNVPSLLFYPRRMPRRF
VPDQRNRADLVCAELHFDGGAENPIVAALPEVVFLPLDSIAGAGAVLATLFDEAFSDNCGRHVVVDRLFEVVLVQLLRHL
LEAGELRAGMLAGLAHSKLRKALAAMHEQPAREWSLARLAGIAGMSRSVFAGNFRDIVGCTAGAYLQGWRIRLAQQALRQ
GKRLKMIAIEVGYGSEAALSRAFKAQCGVTPRAWRQALAAD
>Mature_280_residues
AEACVDRLDALLSRFPVRARMFHSGALCGVTDFSQSGEGGQLHLIRAGRLDVIHSGRSAGLEVNVPSLLFYPRRMPRRFV
PDQRNRADLVCAELHFDGGAENPIVAALPEVVFLPLDSIAGAGAVLATLFDEAFSDNCGRHVVVDRLFEVVLVQLLRHLL
EAGELRAGMLAGLAHSKLRKALAAMHEQPAREWSLARLAGIAGMSRSVFAGNFRDIVGCTAGAYLQGWRIRLAQQALRQG
KRLKMIAIEVGYGSEAALSRAFKAQCGVTPRAWRQALAAD

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786496, Length=246, Percent_Identity=26.4227642276423, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 30492; Mature: 30361

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEACVDRLDALLSRFPVRARMFHSGALCGVTDFSQSGEGGQLHLIRAGRLDVIHSGRSA
CHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCEEEEECCCCC
GLEVNVPSLLFYPRRMPRRFVPDQRNRADLVCAELHFDGGAENPIVAALPEVVFLPLDSI
CEEECCCHHHHCCHHCCHHCCCCCCCCCCEEEEEEECCCCCCCCHHHHCCHHHEECCHHH
AGAGAVLATLFDEAFSDNCGRHVVVDRLFEVVLVQLLRHLLEAGELRAGMLAGLAHSKLR
CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
KALAAMHEQPAREWSLARLAGIAGMSRSVFAGNFRDIVGCTAGAYLQGWRIRLAQQALRQ
HHHHHHHHCHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
GKRLKMIAIEVGYGSEAALSRAFKAQCGVTPRAWRQALAAD
CCCEEEEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHCCC
>Mature Secondary Structure 
AEACVDRLDALLSRFPVRARMFHSGALCGVTDFSQSGEGGQLHLIRAGRLDVIHSGRSA
HHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCEEEEECCCCC
GLEVNVPSLLFYPRRMPRRFVPDQRNRADLVCAELHFDGGAENPIVAALPEVVFLPLDSI
CEEECCCHHHHCCHHCCHHCCCCCCCCCCEEEEEEECCCCCCCCHHHHCCHHHEECCHHH
AGAGAVLATLFDEAFSDNCGRHVVVDRLFEVVLVQLLRHLLEAGELRAGMLAGLAHSKLR
CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
KALAAMHEQPAREWSLARLAGIAGMSRSVFAGNFRDIVGCTAGAYLQGWRIRLAQQALRQ
HHHHHHHHCHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
GKRLKMIAIEVGYGSEAALSRAFKAQCGVTPRAWRQALAAD
CCCEEEEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1332944 [H]