Definition Prochlorococcus marinus str. MIT 9313 chromosome, complete genome.
Accession NC_005071
Length 2,410,873

Click here to switch to the map view.

The map label for this gene is 33863499

Identifier: 33863499

GI number: 33863499

Start: 1317874

End: 1318605

Strand: Reverse

Name: 33863499

Synonym: PMT1231

Alternate gene names: NA

Gene position: 1318605-1317874 (Counterclockwise)

Preceding gene: 33863500

Following gene: 33863498

Centisome position: 54.69

GC content: 50.55

Gene sequence:

>732_bases
ATGCCTACGCTTGAGATGCCTGTGGCAGCTGTTCTTGACAGCACTGTTGGATCTTCAGAAGCCCTGCCAGACTTCACTTC
AGATAGATATAAGGATGCATACAGCAGAATCAACGCAATAGTCATTGAGGGCGAACAGGAAGCCCATGACAATTACATCG
CGATTGGCACGCTGCTTCCCGATCATGTCGAAGAGCTCAAGCGGCTTGCCAAGATGGAGATGAGGCACAAGAAGGGCTTT
ACAGCTTGCGGCAAGAACCTTGGCGTTGAGGCTGACATGGACTTCGCAAGGGAGTTTTTTGCTCCTTTGCGTGACAACTT
CCAGACAGCTTTAGGGCAGGGGAAAACACCTACATGCTTGCTGATCCAGGCGCTCTTGATTGAAGCCTTTGCTATTTCGG
CTTATCACACCTATATCCCTGTTTCTGACCCCTTTGCTCGCAAGATTACTGAAGGTGTCGTGAAGGACGAGTACACACAC
CTCAATTATGGCGAGGCTTGGCTCAAGGCCAATCTGGAGAGTTGCCGTGAGGAGTTGCTTGAGGCCAATCGCGAGAACCT
GCCTCTGATTCGCCGGATGCTTGATCAGGTAGCAGGTGATGCTGCCGTGCTGCAGATGGATAAGGAAGATCTGATTGAGG
ATTTCTTAATCGCCTACCAGGAATCTCTCACTGAGATTGGCTTTAACACTCGTGAAATTACCCGTATGGCAGCGGCAGCT
CTTGTGAGCTGA

Upstream 100 bases:

>100_bases
CGGTGAGAGAACCAGAATGCTTGTGATTTAAAGGGCGGCTTGAGTCAATTTTCCCTAGTAGAGGGTTAAAGTCTCTCGAC
TTACGACTTTTAAAAGATCC

Downstream 100 bases:

>100_bases
ACTCTGCTGCTTATGGGCCTTCCTTTCCCCTTGTATCCATTCGTGAGCAGCTTGGTCGAAGTTCAAACACTGGACCGTAA
AGACCAGCATTAATGGGATT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 243; Mature: 242

Protein sequence:

>243_residues
MPTLEMPVAAVLDSTVGSSEALPDFTSDRYKDAYSRINAIVIEGEQEAHDNYIAIGTLLPDHVEELKRLAKMEMRHKKGF
TACGKNLGVEADMDFAREFFAPLRDNFQTALGQGKTPTCLLIQALLIEAFAISAYHTYIPVSDPFARKITEGVVKDEYTH
LNYGEAWLKANLESCREELLEANRENLPLIRRMLDQVAGDAAVLQMDKEDLIEDFLIAYQESLTEIGFNTREITRMAAAA
LVS

Sequences:

>Translated_243_residues
MPTLEMPVAAVLDSTVGSSEALPDFTSDRYKDAYSRINAIVIEGEQEAHDNYIAIGTLLPDHVEELKRLAKMEMRHKKGF
TACGKNLGVEADMDFAREFFAPLRDNFQTALGQGKTPTCLLIQALLIEAFAISAYHTYIPVSDPFARKITEGVVKDEYTH
LNYGEAWLKANLESCREELLEANRENLPLIRRMLDQVAGDAAVLQMDKEDLIEDFLIAYQESLTEIGFNTREITRMAAAA
LVS
>Mature_242_residues
PTLEMPVAAVLDSTVGSSEALPDFTSDRYKDAYSRINAIVIEGEQEAHDNYIAIGTLLPDHVEELKRLAKMEMRHKKGFT
ACGKNLGVEADMDFAREFFAPLRDNFQTALGQGKTPTCLLIQALLIEAFAISAYHTYIPVSDPFARKITEGVVKDEYTHL
NYGEAWLKANLESCREELLEANRENLPLIRRMLDQVAGDAAVLQMDKEDLIEDFLIAYQESLTEIGFNTREITRMAAAAL
VS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27179; Mature: 27048

Theoretical pI: Translated: 4.45; Mature: 4.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTLEMPVAAVLDSTVGSSEALPDFTSDRYKDAYSRINAIVIEGEQEAHDNYIAIGTLLP
CCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCEEEEECCHHHCCCEEEEECCCH
DHVEELKRLAKMEMRHKKGFTACGKNLGVEADMDFAREFFAPLRDNFQTALGQGKTPTCL
HHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHH
LIQALLIEAFAISAYHTYIPVSDPFARKITEGVVKDEYTHLNYGEAWLKANLESCREELL
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
EANRENLPLIRRMLDQVAGDAAVLQMDKEDLIEDFLIAYQESLTEIGFNTREITRMAAAA
HCCCCCCHHHHHHHHHHCCCHHHEECCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
LVS
HCC
>Mature Secondary Structure 
PTLEMPVAAVLDSTVGSSEALPDFTSDRYKDAYSRINAIVIEGEQEAHDNYIAIGTLLP
CCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCEEEEECCHHHCCCEEEEECCCH
DHVEELKRLAKMEMRHKKGFTACGKNLGVEADMDFAREFFAPLRDNFQTALGQGKTPTCL
HHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHH
LIQALLIEAFAISAYHTYIPVSDPFARKITEGVVKDEYTHLNYGEAWLKANLESCREELL
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
EANRENLPLIRRMLDQVAGDAAVLQMDKEDLIEDFLIAYQESLTEIGFNTREITRMAAAA
HCCCCCCHHHHHHHHHHCCCHHHEECCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
LVS
HCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA