BacMap

Definition	Prochlorococcus marinus str. MIT 9313 chromosome, complete genome.
Accession	NC_005071
Length	2,410,873

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The map label for this gene is fabG [H]

Identifier: 33863496

GI number: 33863496

Start: 1314923

End: 1315630

Strand: Reverse

Name: fabG [H]

Synonym: PMT1228

Alternate gene names: 33863496

Gene position: 1315630-1314923 (Counterclockwise)

Preceding gene: 33863497

Following gene: 33863495

Centisome position: 54.57

GC content: 51.41

Gene sequence:

>708_bases
TTGCCTACTGCCCTGATTACTGGAGCATCCCGCGGTATCGGAGAAGCAGCTGCGCGGTTGTTTGCCAATTCCGGTTGGGA
TTTGATGTTGGTAGCCCGCAGCCAAGATGCACTTCAGGCACTTTCCCAAGAGCTAAAAAGTACAGGCCAGAATGTTCTTT
TTAAATCAATCGATTTGGCTGATCCAGAAGCCATCGCTCCTGGTATCGAGGATTTGCTTGGACGGGGACATTGCCCATCA
GTGTTGATCAACAATGCTGGGGCGGCTTGGACAGGGGATCTTCTATCCATGCCTTTGAATCGTTGGCAATGGTTGCTTCA
GATGAATCTCACTAGTGTCTTTCAATTGTGTTCTGTTGTGGTGCCTGCGATGCGTGCTAGCGGTGGATTGGTGATCAATG
TGAGCAGTCATGCCTCTCGCAATGCTTTTCCACAGTGGGGTGCATACTGCACTACCAAGGCAGCATTGGCTACTTTTACT
AGTTGCTTGGCAGCGGAGGAGCGCAATCATGGGATACGTGCTTGCACCCTTACGCTTGGTTCGGTCAATACCCCTCTTTG
GGATACTGAAACCGTGCAAAGTAGCTTCGACCGTGACGCCATGCTTTCTGTTGAGCAGGCTGCCGCTGCCCTTCTTCACT
TGGCCCAACAGCCACCATCACAGGTGATTGAAGATCTAACTCTGATGCCAGCCACTGGCGCCTTTTGA

Upstream 100 bases:

>100_bases
AGCGCGGTATCGAAAATTCCGGGCTATGGGTCGTGTTCTCGATCCAAGCTCGTCGGAAACCGGCTTGCCTGCCTAGGGTT
ATTGGGGTTGCATTCGCTCC

Downstream 100 bases:

>100_bases
ACCAGCCTTTAATGACTTCCATCATCCCAGCATCATCGAAAGGCCTTGGCAATGACAAAAATGCTTCGCCTGACAATGGT
CAAATTGCCAATACAAGCAA

Product: short chain dehydrogenase

Products: NA

Alternate protein names: 3-ketoacyl-acyl carrier protein reductase [H]

Number of amino acids: Translated: 235; Mature: 234

Protein sequence:

>235_residues
MPTALITGASRGIGEAAARLFANSGWDLMLVARSQDALQALSQELKSTGQNVLFKSIDLADPEAIAPGIEDLLGRGHCPS
VLINNAGAAWTGDLLSMPLNRWQWLLQMNLTSVFQLCSVVVPAMRASGGLVINVSSHASRNAFPQWGAYCTTKAALATFT
SCLAAEERNHGIRACTLTLGSVNTPLWDTETVQSSFDRDAMLSVEQAAAALLHLAQQPPSQVIEDLTLMPATGAF

Sequences:

>Translated_235_residues
MPTALITGASRGIGEAAARLFANSGWDLMLVARSQDALQALSQELKSTGQNVLFKSIDLADPEAIAPGIEDLLGRGHCPS
VLINNAGAAWTGDLLSMPLNRWQWLLQMNLTSVFQLCSVVVPAMRASGGLVINVSSHASRNAFPQWGAYCTTKAALATFT
SCLAAEERNHGIRACTLTLGSVNTPLWDTETVQSSFDRDAMLSVEQAAAALLHLAQQPPSQVIEDLTLMPATGAF
>Mature_234_residues
PTALITGASRGIGEAAARLFANSGWDLMLVARSQDALQALSQELKSTGQNVLFKSIDLADPEAIAPGIEDLLGRGHCPSV
LINNAGAAWTGDLLSMPLNRWQWLLQMNLTSVFQLCSVVVPAMRASGGLVINVSSHASRNAFPQWGAYCTTKAALATFTS
CLAAEERNHGIRACTLTLGSVNTPLWDTETVQSSFDRDAMLSVEQAAAALLHLAQQPPSQVIEDLTLMPATGAF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI20149619, Length=189, Percent_Identity=26.984126984127, Blast_Score=78, Evalue=6e-15,
Organism=Homo sapiens, GI7705925, Length=220, Percent_Identity=29.0909090909091, Blast_Score=74, Evalue=9e-14,
Organism=Homo sapiens, GI7705855, Length=181, Percent_Identity=29.8342541436464, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI109715829, Length=242, Percent_Identity=26.8595041322314, Blast_Score=71, Evalue=8e-13,
Organism=Homo sapiens, GI4557649, Length=188, Percent_Identity=27.6595744680851, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI59889578, Length=178, Percent_Identity=27.5280898876405, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI31542939, Length=198, Percent_Identity=29.2929292929293, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI38348362, Length=181, Percent_Identity=30.939226519337, Blast_Score=65, Evalue=4e-11,
Organism=Homo sapiens, GI38424085, Length=181, Percent_Identity=30.939226519337, Blast_Score=65, Evalue=5e-11,
Organism=Escherichia coli, GI87082100, Length=218, Percent_Identity=32.1100917431193, Blast_Score=97, Evalue=9e-22,
Organism=Escherichia coli, GI1787335, Length=184, Percent_Identity=30.9782608695652, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1788459, Length=188, Percent_Identity=28.7234042553192, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI2367175, Length=205, Percent_Identity=28.780487804878, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI1787820, Length=245, Percent_Identity=24.4897959183673, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786701, Length=188, Percent_Identity=28.1914893617021, Blast_Score=63, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71994604, Length=203, Percent_Identity=33.9901477832512, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI71994600, Length=191, Percent_Identity=32.4607329842932, Blast_Score=94, Evalue=7e-20,
Organism=Caenorhabditis elegans, GI17555706, Length=230, Percent_Identity=32.1739130434783, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17562908, Length=195, Percent_Identity=30.2564102564103, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17559104, Length=191, Percent_Identity=32.9842931937173, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17562906, Length=195, Percent_Identity=29.7435897435897, Blast_Score=81, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI193204405, Length=194, Percent_Identity=31.9587628865979, Blast_Score=80, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI17538480, Length=209, Percent_Identity=30.1435406698565, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17531453, Length=200, Percent_Identity=30.5, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17560220, Length=196, Percent_Identity=31.6326530612245, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17562904, Length=192, Percent_Identity=31.7708333333333, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17560150, Length=188, Percent_Identity=27.1276595744681, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17562910, Length=192, Percent_Identity=32.2916666666667, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17559552, Length=246, Percent_Identity=25.609756097561, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17551412, Length=204, Percent_Identity=29.4117647058824, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17562990, Length=186, Percent_Identity=27.4193548387097, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17560332, Length=192, Percent_Identity=28.6458333333333, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI25152911, Length=181, Percent_Identity=28.1767955801105, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17538486, Length=189, Percent_Identity=30.1587301587302, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17560676, Length=185, Percent_Identity=26.4864864864865, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17563726, Length=193, Percent_Identity=27.979274611399, Blast_Score=64, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=245, Percent_Identity=28.5714285714286, Blast_Score=94, Evalue=2e-20,
Organism=Saccharomyces cerevisiae, GI6322226, Length=185, Percent_Identity=28.6486486486486, Blast_Score=79, Evalue=7e-16,
Organism=Saccharomyces cerevisiae, GI6322227, Length=191, Percent_Identity=27.7486910994764, Blast_Score=74, Evalue=3e-14,
Organism=Drosophila melanogaster, GI23397609, Length=183, Percent_Identity=33.3333333333333, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI116007236, Length=243, Percent_Identity=28.8065843621399, Blast_Score=88, Evalue=5e-18,
Organism=Drosophila melanogaster, GI28571526, Length=229, Percent_Identity=28.82096069869, Blast_Score=87, Evalue=9e-18,
Organism=Drosophila melanogaster, GI21357041, Length=221, Percent_Identity=28.0542986425339, Blast_Score=84, Evalue=6e-17,
Organism=Drosophila melanogaster, GI24639444, Length=188, Percent_Identity=29.2553191489362, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24644339, Length=232, Percent_Identity=29.3103448275862, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24584752, Length=203, Percent_Identity=29.064039408867, Blast_Score=78, Evalue=6e-15,
Organism=Drosophila melanogaster, GI21358495, Length=189, Percent_Identity=28.042328042328, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24584748, Length=175, Percent_Identity=32.5714285714286, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI161076933, Length=175, Percent_Identity=32.5714285714286, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24641232, Length=241, Percent_Identity=26.5560165975104, Blast_Score=70, Evalue=9e-13,
Organism=Drosophila melanogaster, GI21356301, Length=195, Percent_Identity=27.6923076923077, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI28571387, Length=244, Percent_Identity=29.0983606557377, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24643142, Length=182, Percent_Identity=31.8681318681319, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI21355319, Length=196, Percent_Identity=26.0204081632653, Blast_Score=65, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011284
- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: =1.1.1.100 [H]

Molecular weight: Translated: 24950; Mature: 24819

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTALITGASRGIGEAAARLFANSGWDLMLVARSQDALQALSQELKSTGQNVLFKSIDLA
CCCCEECCCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCHHHHHHHCCCC
DPEAIAPGIEDLLGRGHCPSVLINNAGAAWTGDLLSMPLNRWQWLLQMNLTSVFQLCSVV
CCHHHCCCHHHHHCCCCCCHHEECCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHH
VPAMRASGGLVINVSSHASRNAFPQWGAYCTTKAALATFTSCLAAEERNHGIRACTLTLG
HHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEC
SVNTPLWDTETVQSSFDRDAMLSVEQAAAALLHLAQQPPSQVIEDLTLMPATGAF
CCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
PTALITGASRGIGEAAARLFANSGWDLMLVARSQDALQALSQELKSTGQNVLFKSIDLA
CCCEECCCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCHHHHHHHCCCC
DPEAIAPGIEDLLGRGHCPSVLINNAGAAWTGDLLSMPLNRWQWLLQMNLTSVFQLCSVV
CCHHHCCCHHHHHCCCCCCHHEECCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHH
VPAMRASGGLVINVSSHASRNAFPQWGAYCTTKAALATFTSCLAAEERNHGIRACTLTLG
HHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEC
SVNTPLWDTETVQSSFDRDAMLSVEQAAAALLHLAQQPPSQVIEDLTLMPATGAF
CCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9784136 [H]