Click here to switch to the map view.

The map label for this gene is sbtA

Identifier: 33863482

GI number: 33863482

Start: 1298890

End: 1299909

Strand: Reverse

Name: sbtA

Synonym: PMT1213

Alternate gene names: NA

Gene position: 1299909-1298890 (Counterclockwise)

Preceding gene: 33863483

Following gene: 33863481

Centisome position: 53.92

GC content: 44.71

Gene sequence:

>1020_bases
ATGATCACAGCAACCGCAACAGCACTTGACGCAGGGCTCGTACTGGCCAATGTTTTATCACCAAAGGTTTTATTTTTTTT
CTTGGGTGCGATTGCGGTTTTATTGAATGCTGACCTTGAGATTCCTGCGCCGCTGCCGAAATTATTTTCACTTTATCTGT
TGATGGCCGTTGGCTTTAGGGGTGGCATGGCTTTGGCGAAAGATGGTCTCGGTGGCCAAGTCATCATAACTATTGCTGTT
TCTGTGTTAATGGCGGCGGTCATCCCGTTGATTTGCTTCTGTATTTTGCGATTGAGGTTTGATGTCTTTAATGCAGCAGC
AATATCAGCGACATACGGCTCAATTAGCGCAGTGACCTTTATCGCTGCTGAGAGTTTTCTTCAGGCTCAAAATATTTCTT
ATGACGGATTTATGGTGGCCCCACTGGCGTTAATGGAATCACCGGCAATCATCGTTGGCTTGGTCCTAGTTCGGCTTGGT
TCCCGTCAGGCACGTCCTGGTTCTGATGGAATGAATTGGCGCAAGGTTCTGCATGAATCGATGCTGAATGGCTATGTCTA
TTTGATTGCAGGTAGCCTTGTAATTGGTTTCATTGCTTCTATCTATAGCCCTGCTGGTGTAGAGAAGATGGAACCATTCG
TTTATAAGTTTTTCTATGGAGTCTTGTGCTTCTTCTTGCTGGACATGGGAATCGTTGCGGCGCAGCGTTTTAAGGACCTC
AAAAAAGCAGGAGCGTTTCTTATCTTTTTTGCCATTCTGATGCCAATGTTCAATGCGTTAATCGGAGGCCTTGTTGCTAG
GGCACTTGGTTTAGGCTATGGCAATGCACTCTTGTTTATTATTTTGTGCTCTAGTGCCTCATATATTGCCGTCCCTACGG
CAATGCGAATGACAGTTCCAGAGGCCAACCCAAGGTATTACATTTCTAGCGCCTTGGGATTAACTTTCCCTTTTAATCAT
ACGATTGGGATTCCACTATATATGGGTTTGGTTTACAAGTTAATCCCTGCATCAATTTAA

Upstream 100 bases:

>100_bases
TTCAGATTTGAATGGTCTGAAAAATTTTCTACTCTTCTTTTAGTCACATCTTGCCAAGTCATTATCTAAAACAGACCAGA
TTTCCCTGCAACTTCTTTAT

Downstream 100 bases:

>100_bases
AATCATGAAGCGACTAGATTTAATTGTAAGCGAGAGAGAGCTTGAGTCAGTGATTAAAGCTCTTGATGAAGCTGGGGCAC
CTGGCTATTCAGTCATTAGG

Product: sodium-dependent bicarbonate transporter

Products: NA

Alternate protein names: Sodium-Dependent Bicarbonate Transporter; Sodium Bicarbonate Cotransporter; Conserved Domain Protein; SBT Type Permease Sodium-Bicarbonate; Membrane Permease; Permease-Like Protein; Domain Transmembrane Protein

Number of amino acids: Translated: 339; Mature: 339

Protein sequence:

>339_residues
MITATATALDAGLVLANVLSPKVLFFFLGAIAVLLNADLEIPAPLPKLFSLYLLMAVGFRGGMALAKDGLGGQVIITIAV
SVLMAAVIPLICFCILRLRFDVFNAAAISATYGSISAVTFIAAESFLQAQNISYDGFMVAPLALMESPAIIVGLVLVRLG
SRQARPGSDGMNWRKVLHESMLNGYVYLIAGSLVIGFIASIYSPAGVEKMEPFVYKFFYGVLCFFLLDMGIVAAQRFKDL
KKAGAFLIFFAILMPMFNALIGGLVARALGLGYGNALLFIILCSSASYIAVPTAMRMTVPEANPRYYISSALGLTFPFNH
TIGIPLYMGLVYKLIPASI

Sequences:

>Translated_339_residues
MITATATALDAGLVLANVLSPKVLFFFLGAIAVLLNADLEIPAPLPKLFSLYLLMAVGFRGGMALAKDGLGGQVIITIAV
SVLMAAVIPLICFCILRLRFDVFNAAAISATYGSISAVTFIAAESFLQAQNISYDGFMVAPLALMESPAIIVGLVLVRLG
SRQARPGSDGMNWRKVLHESMLNGYVYLIAGSLVIGFIASIYSPAGVEKMEPFVYKFFYGVLCFFLLDMGIVAAQRFKDL
KKAGAFLIFFAILMPMFNALIGGLVARALGLGYGNALLFIILCSSASYIAVPTAMRMTVPEANPRYYISSALGLTFPFNH
TIGIPLYMGLVYKLIPASI
>Mature_339_residues
MITATATALDAGLVLANVLSPKVLFFFLGAIAVLLNADLEIPAPLPKLFSLYLLMAVGFRGGMALAKDGLGGQVIITIAV
SVLMAAVIPLICFCILRLRFDVFNAAAISATYGSISAVTFIAAESFLQAQNISYDGFMVAPLALMESPAIIVGLVLVRLG
SRQARPGSDGMNWRKVLHESMLNGYVYLIAGSLVIGFIASIYSPAGVEKMEPFVYKFFYGVLCFFLLDMGIVAAQRFKDL
KKAGAFLIFFAILMPMFNALIGGLVARALGLGYGNALLFIILCSSASYIAVPTAMRMTVPEANPRYYISSALGLTFPFNH
TIGIPLYMGLVYKLIPASI

Specific function: Unknown

COG id: COG3329

COG function: function code R; Predicted permease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36290; Mature: 36290

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITATATALDAGLVLANVLSPKVLFFFLGAIAVLLNADLEIPAPLPKLFSLYLLMAVGFR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCC
GGMALAKDGLGGQVIITIAVSVLMAAVIPLICFCILRLRFDVFNAAAISATYGSISAVTF
CCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
IAAESFLQAQNISYDGFMVAPLALMESPAIIVGLVLVRLGSRQARPGSDGMNWRKVLHES
HHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
MLNGYVYLIAGSLVIGFIASIYSPAGVEKMEPFVYKFFYGVLCFFLLDMGIVAAQRFKDL
HHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KKAGAFLIFFAILMPMFNALIGGLVARALGLGYGNALLFIILCSSASYIAVPTAMRMTVP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEECCHHEEECC
EANPRYYISSALGLTFPFNHTIGIPLYMGLVYKLIPASI
CCCCCEEEEHHCCCCCCCCCCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MITATATALDAGLVLANVLSPKVLFFFLGAIAVLLNADLEIPAPLPKLFSLYLLMAVGFR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCC
GGMALAKDGLGGQVIITIAVSVLMAAVIPLICFCILRLRFDVFNAAAISATYGSISAVTF
CCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
IAAESFLQAQNISYDGFMVAPLALMESPAIIVGLVLVRLGSRQARPGSDGMNWRKVLHES
HHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
MLNGYVYLIAGSLVIGFIASIYSPAGVEKMEPFVYKFFYGVLCFFLLDMGIVAAQRFKDL
HHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KKAGAFLIFFAILMPMFNALIGGLVARALGLGYGNALLFIILCSSASYIAVPTAMRMTVP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEECCHHEEECC
EANPRYYISSALGLTFPFNHTIGIPLYMGLVYKLIPASI
CCCCCEEEEHHCCCCCCCCCCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA