Click here to switch to the map view.

The map label for this gene is araQ [H]

Identifier: 33863391

GI number: 33863391

Start: 1210315

End: 1211178

Strand: Reverse

Name: araQ [H]

Synonym: PMT1120

Alternate gene names: 33863391

Gene position: 1211178-1210315 (Counterclockwise)

Preceding gene: 33863392

Following gene: 33863389

Centisome position: 50.24

GC content: 52.31

Gene sequence:

>864_bases
ATGGGGCGTTTTCCCTATGTGGAGATGAGGCGTAAGAGCTTGGCTTTGCCACTGCTGAAAGGTCTTCAGTTAGGGGTCCT
TATCGTGTTGGCGCTTGTCATTCTCCTTCCATTGCTTTGGCTGGTAAGCACGTCTTTGAAAGGGCCCGCTGAAGAGATTT
TTACTAATCCTCCAGCCTTACTACCTGCTGAACCGAGCCTGATGGCGTATTGGCGACTATTCGCCGACAATCCGCTAGGG
ATTTATTTGCTCAACAGCACAGTAGTGAGCTGTTTGGCGGTGGTGGCCAATTTGCTTTTCTGCTCCCTGGCGGCCTATCC
ACTCGCTCGGATGCGCTTTGCCGGAAGAGGTCTGGTCTTGGCCCTTGTGGTGGCAACCATCCTCATTCCTTTTCAGGTGG
TGATGATCCCTTTGTATCTTTTGATGGTGCAGTTGGGATTGCGTAACTCTCTGATGGCCTTGGTGATTCCACAGGCCGCA
ACAGCCTTTGGGCTCTATCTCTTGCGACAGAGTTTTTTGACGGTGCCCGTGGAACTTGAAGAGGCTGCGCGAATCGATGG
TTGTAGTCGATTGGGTGAATGGTGGAACGTGATGATTCCGGCTGCTCGTGCTGATCTAATCACCCTGGCCATGTTTGTGT
TTATCGGCACTTGGAGCGATTTCCTTTGGCCTTTGGTGATCTTGGATGACCCCAGCCTTTACACCCTTCCACTTGGCCTA
CAGCAGCTCGCCAGCAGCTTCTCTCTTGACTGGAGAATTGTGGCAGCTGGGTCGGTGGTGTCGATTTTGCCGGTGCTGGC
ACTCTTCATCCTTTTGCAGCGTTTTATTCTCCCTAGTGCAAGTGGTGATGCGGTGAAGGGATAG

Upstream 100 bases:

>100_bases
TGTGAATGCGCTTAATCGGCTGGTGGCAGGTTGCGGTCGCCAGTCTCTTCATCCCCAACATGATGCTGTGCTAGCTGATC
TACGGTCAGGCATCTGAACA

Downstream 100 bases:

>100_bases
GTTTTTGATCGCCAAGAATCAATCCCAGGCTCTTGTCAAGACTGTCAGGGTTCTATGAAGCTCAAGGTTGTGGTGACAGC
CCTGGAGCTGATGGTGTGGC

Product: binding-protein dependent transport system inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 286

Protein sequence:

>287_residues
MGRFPYVEMRRKSLALPLLKGLQLGVLIVLALVILLPLLWLVSTSLKGPAEEIFTNPPALLPAEPSLMAYWRLFADNPLG
IYLLNSTVVSCLAVVANLLFCSLAAYPLARMRFAGRGLVLALVVATILIPFQVVMIPLYLLMVQLGLRNSLMALVIPQAA
TAFGLYLLRQSFLTVPVELEEAARIDGCSRLGEWWNVMIPAARADLITLAMFVFIGTWSDFLWPLVILDDPSLYTLPLGL
QQLASSFSLDWRIVAAGSVVSILPVLALFILLQRFILPSASGDAVKG

Sequences:

>Translated_287_residues
MGRFPYVEMRRKSLALPLLKGLQLGVLIVLALVILLPLLWLVSTSLKGPAEEIFTNPPALLPAEPSLMAYWRLFADNPLG
IYLLNSTVVSCLAVVANLLFCSLAAYPLARMRFAGRGLVLALVVATILIPFQVVMIPLYLLMVQLGLRNSLMALVIPQAA
TAFGLYLLRQSFLTVPVELEEAARIDGCSRLGEWWNVMIPAARADLITLAMFVFIGTWSDFLWPLVILDDPSLYTLPLGL
QQLASSFSLDWRIVAAGSVVSILPVLALFILLQRFILPSASGDAVKG
>Mature_286_residues
GRFPYVEMRRKSLALPLLKGLQLGVLIVLALVILLPLLWLVSTSLKGPAEEIFTNPPALLPAEPSLMAYWRLFADNPLGI
YLLNSTVVSCLAVVANLLFCSLAAYPLARMRFAGRGLVLALVVATILIPFQVVMIPLYLLMVQLGLRNSLMALVIPQAAT
AFGLYLLRQSFLTVPVELEEAARIDGCSRLGEWWNVMIPAARADLITLAMFVFIGTWSDFLWPLVILDDPSLYTLPLGLQ
QLASSFSLDWRIVAAGSVVSILPVLALFILLQRFILPSASGDAVKG

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=273, Percent_Identity=32.6007326007326, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1789860, Length=267, Percent_Identity=27.7153558052434, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1790464, Length=275, Percent_Identity=26.5454545454545, Blast_Score=75, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31404; Mature: 31273

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRFPYVEMRRKSLALPLLKGLQLGVLIVLALVILLPLLWLVSTSLKGPAEEIFTNPPAL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCC
LPAEPSLMAYWRLFADNPLGIYLLNSTVVSCLAVVANLLFCSLAAYPLARMRFAGRGLVL
CCCCCHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
ALVVATILIPFQVVMIPLYLLMVQLGLRNSLMALVIPQAATAFGLYLLRQSFLTVPVELE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHH
EAARIDGCSRLGEWWNVMIPAARADLITLAMFVFIGTWSDFLWPLVILDDPSLYTLPLGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCEEEECCCH
QQLASSFSLDWRIVAAGSVVSILPVLALFILLQRFILPSASGDAVKG
HHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
GRFPYVEMRRKSLALPLLKGLQLGVLIVLALVILLPLLWLVSTSLKGPAEEIFTNPPAL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCC
LPAEPSLMAYWRLFADNPLGIYLLNSTVVSCLAVVANLLFCSLAAYPLARMRFAGRGLVL
CCCCCHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
ALVVATILIPFQVVMIPLYLLMVQLGLRNSLMALVIPQAATAFGLYLLRQSFLTVPVELE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHH
EAARIDGCSRLGEWWNVMIPAARADLITLAMFVFIGTWSDFLWPLVILDDPSLYTLPLGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCEEEECCCH
QQLASSFSLDWRIVAAGSVVSILPVLALFILLQRFILPSASGDAVKG
HHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]