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The map label for this gene is 33863384

Identifier: 33863384

GI number: 33863384

Start: 1205961

End: 1206368

Strand: Reverse

Name: 33863384

Synonym: PMT1113

Alternate gene names: NA

Gene position: 1206368-1205961 (Counterclockwise)

Preceding gene: 33863385

Following gene: 33863383

Centisome position: 50.04

GC content: 53.92

Gene sequence:

>408_bases
ATGAGTGCTGTGGTTCGTGGTTATTGGTTGATGGCCTGGATCGGCTTGCTAGCCAATGTGGCGGCCCTCCCCATTATTGG
AGTGGTTGCATTTACTAATCAGGCTTTGCAAACAACCAATATCAGCCTCGCCTTTAGCCTCGCCTGGCCGGCTGCCATCG
TTGGCATCGTGGCATCTGCTGGCCTTTTGGCTGAGCGGCGATGGGGCGTCATCGTTGCCATTGTTGCTTTATCGATGGCC
TTAGCAGGGTCGTTGCCTTACGGAATTGTCCGCCTGGTTTTGGATAAGGCATTGGTGGTGCCTGACTCTCAGGCTCTTGG
TGGCTTGTCCCTGCTGATGTTCGTTGTGAATCTGCTGGCGCTGCTTTATTGGTGTCGTCCGATTCATCGTCAAGGAGGTC
GACTTTGA

Upstream 100 bases:

>100_bases
TTGTCGATCCGCGAGCTCAGTCCAATTCCTGAATCAACCTGATTTCTTTTAGAAGCGTCTAGTAGGCCTGCTTACGTTGG
CACTAGTCAGGGTTTTTGTG

Downstream 100 bases:

>100_bases
TCTCAGTCGTTGATGATTTTCTGATCAGTTTTCATTGCCTGTTCATTGAGCTCGCGTGGGCTTAATGAATGAGGATTTTA
TTTCAGGATTCCTGGCTAAT

Product: Hepatitis C virus core protein

Products: NA

Alternate protein names: Hepatitis C Virus Core Protein; Core Protein-Like Protein; Fiber Protein

Number of amino acids: Translated: 135; Mature: 134

Protein sequence:

>135_residues
MSAVVRGYWLMAWIGLLANVAALPIIGVVAFTNQALQTTNISLAFSLAWPAAIVGIVASAGLLAERRWGVIVAIVALSMA
LAGSLPYGIVRLVLDKALVVPDSQALGGLSLLMFVVNLLALLYWCRPIHRQGGRL

Sequences:

>Translated_135_residues
MSAVVRGYWLMAWIGLLANVAALPIIGVVAFTNQALQTTNISLAFSLAWPAAIVGIVASAGLLAERRWGVIVAIVALSMA
LAGSLPYGIVRLVLDKALVVPDSQALGGLSLLMFVVNLLALLYWCRPIHRQGGRL
>Mature_134_residues
SAVVRGYWLMAWIGLLANVAALPIIGVVAFTNQALQTTNISLAFSLAWPAAIVGIVASAGLLAERRWGVIVAIVALSMAL
AGSLPYGIVRLVLDKALVVPDSQALGGLSLLMFVVNLLALLYWCRPIHRQGGRL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14291; Mature: 14160

Theoretical pI: Translated: 10.73; Mature: 10.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAVVRGYWLMAWIGLLANVAALPIIGVVAFTNQALQTTNISLAFSLAWPAAIVGIVASA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHH
GLLAERRWGVIVAIVALSMALAGSLPYGIVRLVLDKALVVPDSQALGGLSLLMFVVNLLA
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
LLYWCRPIHRQGGRL
HHHHHHHHHHCCCCC
>Mature Secondary Structure 
SAVVRGYWLMAWIGLLANVAALPIIGVVAFTNQALQTTNISLAFSLAWPAAIVGIVASA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHH
GLLAERRWGVIVAIVALSMALAGSLPYGIVRLVLDKALVVPDSQALGGLSLLMFVVNLLA
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
LLYWCRPIHRQGGRL
HHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA