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The map label for this gene is rbpD [H]

Identifier: 33863352

GI number: 33863352

Start: 1167981

End: 1168316

Strand: Reverse

Name: rbpD [H]

Synonym: PMT1081

Alternate gene names: 33863352

Gene position: 1168316-1167981 (Counterclockwise)

Preceding gene: 33863353

Following gene: 33863351

Centisome position: 48.46

GC content: 58.04

Gene sequence:

>336_bases
ATGACCATTTACATAGGCAACCTCTCTTTCCAGGCGGAACAGGAGGACTTGCTCGACCTGTTCAGCCAATACGGCGAAGT
CAAGACATGCAGCCTCCCTCTCGATCGAGAGACGGGGCGCAAGCGTGGTTTTGCCTTCGTTGAGATGACAAACGATGCCG
ACGAACAAAAAGCGATTGACGATCTTCAGGACGTTGAATGGATGGGGCGAATGATTCGCGTGAATAAAGCAACACCACGT
GAACGCACAGGTGGCGGTGGTGGCCGTGGTGGCTACGGCGGTGGCGGTGGCGGTGGCGGTGGCTACGGCGGTGGCGGTGG
CGGCAACCGCTGGTAA

Upstream 100 bases:

>100_bases
CGGCTCGCTCCCTAGGCTTCGGCTTTCCAGCTCCAGCATTCAAGGACTTTCCTTTTCGGACCAAGGCTTCACTGATCAAA
TCCCATCGGTCCTTTTAGGA

Downstream 100 bases:

>100_bases
ATCAGTAGCCTTAGCCCTTTCAATAAGGCCACCCTGTGGGTGGCCTTATTCGTCTTAATAACTTTCTTCTGGATCGATTA
ATTCGAGCATTAGATCCTTT

Product: RNA-binding protein RbpD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 111; Mature: 110

Protein sequence:

>111_residues
MTIYIGNLSFQAEQEDLLDLFSQYGEVKTCSLPLDRETGRKRGFAFVEMTNDADEQKAIDDLQDVEWMGRMIRVNKATPR
ERTGGGGGRGGYGGGGGGGGGYGGGGGGNRW

Sequences:

>Translated_111_residues
MTIYIGNLSFQAEQEDLLDLFSQYGEVKTCSLPLDRETGRKRGFAFVEMTNDADEQKAIDDLQDVEWMGRMIRVNKATPR
ERTGGGGGRGGYGGGGGGGGGYGGGGGGNRW
>Mature_110_residues
TIYIGNLSFQAEQEDLLDLFSQYGEVKTCSLPLDRETGRKRGFAFVEMTNDADEQKAIDDLQDVEWMGRMIRVNKATPRE
RTGGGGGRGGYGGGGGGGGGYGGGGGGNRW

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI5174637, Length=88, Percent_Identity=38.6363636363636, Blast_Score=64, Evalue=2e-11,
Organism=Homo sapiens, GI303305009, Length=78, Percent_Identity=39.7435897435897, Blast_Score=64, Evalue=2e-11,
Organism=Homo sapiens, GI45439316, Length=92, Percent_Identity=36.9565217391304, Blast_Score=64, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17508587, Length=80, Percent_Identity=47.5, Blast_Score=80, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17508567, Length=78, Percent_Identity=41.025641025641, Blast_Score=73, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17508585, Length=77, Percent_Identity=40.2597402597403, Blast_Score=72, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17539498, Length=82, Percent_Identity=37.8048780487805, Blast_Score=65, Evalue=6e-12,
Organism=Saccharomyces cerevisiae, GI6321599, Length=79, Percent_Identity=36.7088607594937, Blast_Score=62, Evalue=1e-11,
Organism=Drosophila melanogaster, GI17647301, Length=78, Percent_Identity=41.025641025641, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 11828; Mature: 11697

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIYIGNLSFQAEQEDLLDLFSQYGEVKTCSLPLDRETGRKRGFAFVEMTNDADEQKAID
CEEEECCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCEEEEEECCCCCHHHHHH
DLQDVEWMGRMIRVNKATPRERTGGGGGRGGYGGGGGGGGGYGGGGGGNRW
HHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TIYIGNLSFQAEQEDLLDLFSQYGEVKTCSLPLDRETGRKRGFAFVEMTNDADEQKAID
EEEECCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCEEEEEECCCCCHHHHHH
DLQDVEWMGRMIRVNKATPRERTGGGGGRGGYGGGGGGGGGYGGGGGGNRW
HHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]