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The map label for this gene is som

Identifier: 33863269

GI number: 33863269

Start: 1074615

End: 1076282

Strand: Reverse

Name: som

Synonym: PMT0998

Alternate gene names: NA

Gene position: 1076282-1074615 (Counterclockwise)

Preceding gene: 33863270

Following gene: 33863258

Centisome position: 44.64

GC content: 47.42

Gene sequence:

>1668_bases
ATGAAACTCTTCCAGCAATTGCTGGTGGCACCTGCTGCCTTGGGCCTGATGGCGCCAATGGCTTCTAATGCCGCAGACCT
AGCCATCAAAGGTGTGTCCGATTATTCGGCCTCCAGCGAGCAGGTCACCAGCATCTCCCAATTCCAAGATGTTTACCCAA
CCGACTGGGCTTATCAGGCGCTGAGCAACCTGATTGAGCGCTACGGCTGTGTAGCTGGCTATCCAAGCGGTAGCTACTTG
GGCAACAGAGCAATGACCCGCTTTGAAGCGGCTGCTCTGTTGAATGCATGCCTCGATCGCATCACTGAAGTCACCGACGA
ACTGCGTCGTCTGCTCAACGAATTCGAGCAGGAGCTCGCCATCCTCAAGGGCCGTGTTGATGGCCTAGAAGCGCGCGTTG
GTGAACTCGAAGCCACTCAGTTCTCAACCACCACCAAGCTAAAAGGCAAGTCAATCTTCGTTCTTGGTGCAGTCAATGCT
GGAGGTGATGAGTCCCTTTCAGATCCGTACAACGAAGAAGTTGGAGCGTTTACTTTCACATATGATCTGCGCCTTGGTCT
TAATACAAGCTTTACGGGTAAAGATCTTCTTTATACCCGTCTTCGCTCGGGAAATATGGGCTCAACTGCTTGGGAAGGTG
AAGGTCTTAAGGGATCACTAACAGCTCTAGATACTGCTTCTGCGACTGGTGATATCGTAACGATCGATCGCCTCTATTAT
AGGTTCCCTGTTGGCGATGAATTTACATTTATCGCTGGACCATTGGCACGAAATACTGAAATGCTCGGTATTAAGCCTAC
GGCCTATGGAAAGAGCAAAGTACTCGATTACTTTGGTGGAACAATGGGCACACCTGGAGTCTATAACAAAGAAACAGGAG
GTGCTTTTGCTGCAATATGGAAGCAAAAAACTAGCAAAGGTGATCCAGCATTTAGTGCTTCAGTTAGCTATGTTTCTGAC
GCTGGTGAGGCTAATGATGGCAACCCATCAACAGGTGGCTTTATGACAGACAATGCCGAAGGAAATATTACAGGTCAATT
GGCATATAGCAGTAAAAGATGGGGTGTTGCTTTGGGCTATCGTTACGGTCAATGCGGTGTTAAATTTCGCCGTGGAACCG
ACTTAGTTGCTGATAACAAATGGCATCAAAATTGCCAACAGGTCGTTGGCTTTGATTCTGATGGAGACGAGGTCTTTGAT
CAACGCTCCGGAGCATATTCCAACAATTTTGCCGTTAATGCATACTGGCAACCTGAGGATTCAGGTTGGATCCCGTCAGT
CAGCGCAGGTTGGGGTCTTTCTAGTCTGAGTGGTGATTTCTACGATCTTGCCGACAACGACCTAGAGGATGATCTTGAGG
ACCAGGTACCAGATCAATTCCAAAGCTGGATGGTTGGATTGCAATGGAGCGATGTCTTTATGGAAGGTAATTACCTAGGG
CTTGCAGGAGGTCAACCGCAGTTTGTTACCAGTCTTACGGGTGATGAAACCACTTATGATGGTAATTATGCCTTCGAACT
TTGGTATAAATTCCAAGTTACTGACAACATCTCAATCACACCAGCGGTGTTTTATCTGAGTCGTCCAATGGGGCAAGATA
CCGGAGATCAGTACGATAACAAGTTCAATATTTTTGGAGGAGTTGTTCAAACTACGTTTAAGTTCTAA

Upstream 100 bases:

>100_bases
GTCCAAGTCTTAATGTCTTCTTAGTCAAATGCTTTCGTCAAATTTCTAACTTGTTAGCGGGAATTTTCGCCCGTCTCTCA
AGCTCTGTGTGAGGAACCAA

Downstream 100 bases:

>100_bases
CTAATAGGCTTAAAAAGCCAAACTCTCACGGATTAAATTCAATGCCCTCCTTAAACGGAGGGCATTTTTTTATTTTCAAA
TAGCATATTCTCAATGCATC

Product: porin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 555; Mature: 555

Protein sequence:

>555_residues
MKLFQQLLVAPAALGLMAPMASNAADLAIKGVSDYSASSEQVTSISQFQDVYPTDWAYQALSNLIERYGCVAGYPSGSYL
GNRAMTRFEAAALLNACLDRITEVTDELRRLLNEFEQELAILKGRVDGLEARVGELEATQFSTTTKLKGKSIFVLGAVNA
GGDESLSDPYNEEVGAFTFTYDLRLGLNTSFTGKDLLYTRLRSGNMGSTAWEGEGLKGSLTALDTASATGDIVTIDRLYY
RFPVGDEFTFIAGPLARNTEMLGIKPTAYGKSKVLDYFGGTMGTPGVYNKETGGAFAAIWKQKTSKGDPAFSASVSYVSD
AGEANDGNPSTGGFMTDNAEGNITGQLAYSSKRWGVALGYRYGQCGVKFRRGTDLVADNKWHQNCQQVVGFDSDGDEVFD
QRSGAYSNNFAVNAYWQPEDSGWIPSVSAGWGLSSLSGDFYDLADNDLEDDLEDQVPDQFQSWMVGLQWSDVFMEGNYLG
LAGGQPQFVTSLTGDETTYDGNYAFELWYKFQVTDNISITPAVFYLSRPMGQDTGDQYDNKFNIFGGVVQTTFKF

Sequences:

>Translated_555_residues
MKLFQQLLVAPAALGLMAPMASNAADLAIKGVSDYSASSEQVTSISQFQDVYPTDWAYQALSNLIERYGCVAGYPSGSYL
GNRAMTRFEAAALLNACLDRITEVTDELRRLLNEFEQELAILKGRVDGLEARVGELEATQFSTTTKLKGKSIFVLGAVNA
GGDESLSDPYNEEVGAFTFTYDLRLGLNTSFTGKDLLYTRLRSGNMGSTAWEGEGLKGSLTALDTASATGDIVTIDRLYY
RFPVGDEFTFIAGPLARNTEMLGIKPTAYGKSKVLDYFGGTMGTPGVYNKETGGAFAAIWKQKTSKGDPAFSASVSYVSD
AGEANDGNPSTGGFMTDNAEGNITGQLAYSSKRWGVALGYRYGQCGVKFRRGTDLVADNKWHQNCQQVVGFDSDGDEVFD
QRSGAYSNNFAVNAYWQPEDSGWIPSVSAGWGLSSLSGDFYDLADNDLEDDLEDQVPDQFQSWMVGLQWSDVFMEGNYLG
LAGGQPQFVTSLTGDETTYDGNYAFELWYKFQVTDNISITPAVFYLSRPMGQDTGDQYDNKFNIFGGVVQTTFKF
>Mature_555_residues
MKLFQQLLVAPAALGLMAPMASNAADLAIKGVSDYSASSEQVTSISQFQDVYPTDWAYQALSNLIERYGCVAGYPSGSYL
GNRAMTRFEAAALLNACLDRITEVTDELRRLLNEFEQELAILKGRVDGLEARVGELEATQFSTTTKLKGKSIFVLGAVNA
GGDESLSDPYNEEVGAFTFTYDLRLGLNTSFTGKDLLYTRLRSGNMGSTAWEGEGLKGSLTALDTASATGDIVTIDRLYY
RFPVGDEFTFIAGPLARNTEMLGIKPTAYGKSKVLDYFGGTMGTPGVYNKETGGAFAAIWKQKTSKGDPAFSASVSYVSD
AGEANDGNPSTGGFMTDNAEGNITGQLAYSSKRWGVALGYRYGQCGVKFRRGTDLVADNKWHQNCQQVVGFDSDGDEVFD
QRSGAYSNNFAVNAYWQPEDSGWIPSVSAGWGLSSLSGDFYDLADNDLEDDLEDQVPDQFQSWMVGLQWSDVFMEGNYLG
LAGGQPQFVTSLTGDETTYDGNYAFELWYKFQVTDNISITPAVFYLSRPMGQDTGDQYDNKFNIFGGVVQTTFKF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SLH (S-layer homology) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007049
- InterPro:   IPR001119 [H]

Pfam domain/function: PF04966 OprB; PF00395 SLH [H]

EC number: NA

Molecular weight: Translated: 60488; Mature: 60488

Theoretical pI: Translated: 4.16; Mature: 4.16

Prosite motif: PS01072 SLH_DOMAIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLFQQLLVAPAALGLMAPMASNAADLAIKGVSDYSASSEQVTSISQFQDVYPTDWAYQA
CHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCHHHHH
LSNLIERYGCVAGYPSGSYLGNRAMTRFEAAALLNACLDRITEVTDELRRLLNEFEQELA
HHHHHHHHCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILKGRVDGLEARVGELEATQFSTTTKLKGKSIFVLGAVNAGGDESLSDPYNEEVGAFTFT
HHHCCCCCHHHHHCCCCCCEECCEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEE
YDLRLGLNTSFTGKDLLYTRLRSGNMGSTAWEGEGLKGSLTALDTASATGDIVTIDRLYY
EEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEHEEE
RFPVGDEFTFIAGPLARNTEMLGIKPTAYGKSKVLDYFGGTMGTPGVYNKETGGAFAAIW
ECCCCCCEEEEECCCCCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEEH
KQKTSKGDPAFSASVSYVSDAGEANDGNPSTGGFMTDNAEGNITGQLAYSSKRWGVALGY
HHHCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCCEEEEE
RYGQCGVKFRRGTDLVADNKWHQNCQQVVGFDSDGDEVFDQRSGAYSNNFAVNAYWQPED
EECCCCEEEECCCCCEECCHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCEEEEEEECCCC
SGWIPSVSAGWGLSSLSGDFYDLADNDLEDDLEDQVPDQFQSWMVGLQWSDVFMEGNYLG
CCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHHHHCHHHHHHHHCCCEEEHEEEECCEEE
LAGGQPQFVTSLTGDETTYDGNYAFELWYKFQVTDNISITPAVFYLSRPMGQDTGDQYDN
ECCCCCCEEEEECCCCEEECCCEEEEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCC
KFNIFGGVVQTTFKF
EEEEECHHHHHEECC
>Mature Secondary Structure
MKLFQQLLVAPAALGLMAPMASNAADLAIKGVSDYSASSEQVTSISQFQDVYPTDWAYQA
CHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCHHHHH
LSNLIERYGCVAGYPSGSYLGNRAMTRFEAAALLNACLDRITEVTDELRRLLNEFEQELA
HHHHHHHHCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILKGRVDGLEARVGELEATQFSTTTKLKGKSIFVLGAVNAGGDESLSDPYNEEVGAFTFT
HHHCCCCCHHHHHCCCCCCEECCEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEE
YDLRLGLNTSFTGKDLLYTRLRSGNMGSTAWEGEGLKGSLTALDTASATGDIVTIDRLYY
EEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEHEEE
RFPVGDEFTFIAGPLARNTEMLGIKPTAYGKSKVLDYFGGTMGTPGVYNKETGGAFAAIW
ECCCCCCEEEEECCCCCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEEH
KQKTSKGDPAFSASVSYVSDAGEANDGNPSTGGFMTDNAEGNITGQLAYSSKRWGVALGY
HHHCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCCCCEEEEE
RYGQCGVKFRRGTDLVADNKWHQNCQQVVGFDSDGDEVFDQRSGAYSNNFAVNAYWQPED
EECCCCEEEECCCCCEECCHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCEEEEEEECCCC
SGWIPSVSAGWGLSSLSGDFYDLADNDLEDDLEDQVPDQFQSWMVGLQWSDVFMEGNYLG
CCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHHHHCHHHHHHHHCCCEEEHEEEECCEEE
LAGGQPQFVTSLTGDETTYDGNYAFELWYKFQVTDNISITPAVFYLSRPMGQDTGDQYDN
ECCCCCCEEEEECCCCEEECCCEEEEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCC
KFNIFGGVVQTTFKF
EEEEECHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]