| Definition | Prochlorococcus marinus str. MIT 9313 chromosome, complete genome. |
|---|---|
| Accession | NC_005071 |
| Length | 2,410,873 |
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The map label for this gene is 33863238
Identifier: 33863238
GI number: 33863238
Start: 1046630
End: 1047580
Strand: Reverse
Name: 33863238
Synonym: PMT0967
Alternate gene names: NA
Gene position: 1047580-1046630 (Counterclockwise)
Preceding gene: 33863239
Following gene: 33863237
Centisome position: 43.45
GC content: 55.21
Gene sequence:
>951_bases ATGATGAGAATGATTCCCATTCCCATTCCTGGTCTTGGTTCTCCGCCTATCGGCCGAGGCCACGGCTGGAGACTCAGGGG CCTTTCAGGGCGGCGGGTTGGACCAACCCCAAATGATGACCATGCGAATTCCACTCAATCAGCCAACAGCCTTGTTGTTA CAACCATGAGCAAAACTTGGCTGATTTCGGGGCCTCCCGGCTGCGGCAAAACAACCTGGATCCTCAACACGATGCAGAGC CACCCAGGCTCTTGCGGATACCTGCGACTTGAGGGTTGCGCCGATGAAGGCCTTGAACAGGCCCCCGACACAGGAATAGA TCTTGCCTTTCTCCAAGATCAGATTCCTCAACTGAGAGACCTCACTGATCCGCATCTAGACCTTGCATCCCAACCGGACG ACTTGCTGGCATTGATCGAAGTTCCCCAGTTCCGCCCTCCCAAGGAGAGTGGTCTGATCGGGATCGATCCTCGCGTCAAA GCTCAGCTCGAAGCATTTCAGCTGCTCCCTGATCGCCATCTCCACTTCGGCCAAGAGCCTGAATTGCCGAAGCGAGACAC CTTGGAATTCAGCAAGCTCGAATCCTGGACCATCAGCCTTCACAAATATGTCTGGGACCCCAGCAGCCTCAACAGCTTCT GGTTCGAACTTGTGAACGGTGCCTATGGCGATGTTTACCGAGCCAAGGCATTAATGAATCTGCCTGATGGTCGTGCATTT TTCTGCAACTGGATGATGACTCAGGACGGTTCACAGTTCCTGCCCCTGCAAGCAGTTGCACCACCAAATGGCCGCCCCAC TCGAGTGTCTGAATTGGTGGTTCAAGGCAAAGCGCTCGATGCAGTCGGCGCTCAGTCGACGATCGACGACTGCCTGCTCA ACGATGCCGTATTGGAGATGCATCAGGCACCTCTGCGGGATCGGCAACCAGAACTCACTCACTCACGCTGA
Upstream 100 bases:
>100_bases GCAAGCACATGGACCTCTTCTACTGGATTTTGCCCTCACCCCTATTGAGCAAACGAATCAATCTCTTGATGGGGGTGGAC AGGAGGGAATCAAACCAGTC
Downstream 100 bases:
>100_bases TTGTTATGGCTCATGCTGTGATTTCGTGTCTGCACGCCAACCTCGCTGCATTCGAGGCGGTGCTGGATGACATTGATCAA CAAGGGATCGAGACGATCAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 316; Mature: 316
Protein sequence:
>316_residues MMRMIPIPIPGLGSPPIGRGHGWRLRGLSGRRVGPTPNDDHANSTQSANSLVVTTMSKTWLISGPPGCGKTTWILNTMQS HPGSCGYLRLEGCADEGLEQAPDTGIDLAFLQDQIPQLRDLTDPHLDLASQPDDLLALIEVPQFRPPKESGLIGIDPRVK AQLEAFQLLPDRHLHFGQEPELPKRDTLEFSKLESWTISLHKYVWDPSSLNSFWFELVNGAYGDVYRAKALMNLPDGRAF FCNWMMTQDGSQFLPLQAVAPPNGRPTRVSELVVQGKALDAVGAQSTIDDCLLNDAVLEMHQAPLRDRQPELTHSR
Sequences:
>Translated_316_residues MMRMIPIPIPGLGSPPIGRGHGWRLRGLSGRRVGPTPNDDHANSTQSANSLVVTTMSKTWLISGPPGCGKTTWILNTMQS HPGSCGYLRLEGCADEGLEQAPDTGIDLAFLQDQIPQLRDLTDPHLDLASQPDDLLALIEVPQFRPPKESGLIGIDPRVK AQLEAFQLLPDRHLHFGQEPELPKRDTLEFSKLESWTISLHKYVWDPSSLNSFWFELVNGAYGDVYRAKALMNLPDGRAF FCNWMMTQDGSQFLPLQAVAPPNGRPTRVSELVVQGKALDAVGAQSTIDDCLLNDAVLEMHQAPLRDRQPELTHSR >Mature_316_residues MMRMIPIPIPGLGSPPIGRGHGWRLRGLSGRRVGPTPNDDHANSTQSANSLVVTTMSKTWLISGPPGCGKTTWILNTMQS HPGSCGYLRLEGCADEGLEQAPDTGIDLAFLQDQIPQLRDLTDPHLDLASQPDDLLALIEVPQFRPPKESGLIGIDPRVK AQLEAFQLLPDRHLHFGQEPELPKRDTLEFSKLESWTISLHKYVWDPSSLNSFWFELVNGAYGDVYRAKALMNLPDGRAF FCNWMMTQDGSQFLPLQAVAPPNGRPTRVSELVVQGKALDAVGAQSTIDDCLLNDAVLEMHQAPLRDRQPELTHSR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34953; Mature: 34953
Theoretical pI: Translated: 5.57; Mature: 5.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMRMIPIPIPGLGSPPIGRGHGWRLRGLSGRRVGPTPNDDHANSTQSANSLVVTTMSKTW CCEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCEE LISGPPGCGKTTWILNTMQSHPGSCGYLRLEGCADEGLEQAPDTGIDLAFLQDQIPQLRD EEECCCCCCCCEEEEEHHHCCCCCCCEEEECCCHHHHHHHCCCCCCCHHHHHHHCHHHHC LTDPHLDLASQPDDLLALIEVPQFRPPKESGLIGIDPRVKAQLEAFQLLPDRHLHFGQEP CCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEECCCHHHHHHHHHHHCCCCCCCCCCCC ELPKRDTLEFSKLESWTISLHKYVWDPSSLNSFWFELVNGAYGDVYRAKALMNLPDGRAF CCCCCCCCHHHHHHHEEEEEEHEECCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEE FCNWMMTQDGSQFLPLQAVAPPNGRPTRVSELVVQGKALDAVGAQSTIDDCLLNDAVLEM EEEEEEECCCCCCCEEEEECCCCCCCCHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHH HQAPLRDRQPELTHSR HHCCCCCCCCCCCCCC >Mature Secondary Structure MMRMIPIPIPGLGSPPIGRGHGWRLRGLSGRRVGPTPNDDHANSTQSANSLVVTTMSKTW CCEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCEE LISGPPGCGKTTWILNTMQSHPGSCGYLRLEGCADEGLEQAPDTGIDLAFLQDQIPQLRD EEECCCCCCCCEEEEEHHHCCCCCCCEEEECCCHHHHHHHCCCCCCCHHHHHHHCHHHHC LTDPHLDLASQPDDLLALIEVPQFRPPKESGLIGIDPRVKAQLEAFQLLPDRHLHFGQEP CCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEECCCHHHHHHHHHHHCCCCCCCCCCCC ELPKRDTLEFSKLESWTISLHKYVWDPSSLNSFWFELVNGAYGDVYRAKALMNLPDGRAF CCCCCCCCHHHHHHHEEEEEEHEECCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEE FCNWMMTQDGSQFLPLQAVAPPNGRPTRVSELVVQGKALDAVGAQSTIDDCLLNDAVLEM EEEEEEECCCCCCCEEEEECCCCCCCCHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHH HQAPLRDRQPELTHSR HHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA