| Definition | Prochlorococcus marinus str. MIT 9313 chromosome, complete genome. |
|---|---|
| Accession | NC_005071 |
| Length | 2,410,873 |
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The map label for this gene is nrdJ [H]
Identifier: 33863065
GI number: 33863065
Start: 867203
End: 869617
Strand: Direct
Name: nrdJ [H]
Synonym: PMT0793
Alternate gene names: 33863065
Gene position: 867203-869617 (Clockwise)
Preceding gene: 33863060
Following gene: 33863066
Centisome position: 35.97
GC content: 52.59
Gene sequence:
>2415_bases ATGGTGTTACTAAAGCTTGCAGACACCATGAGTGGCGGTAGCGTTCCCATACTTATCGGCATAAGCCAACCTATGACCCT GACTTCGAGCAGACCTGAGATAGCAATGACAGCCTTAGAAGCCAGCGGACAGCGTGGTGATTTCCCTGCCACGGCTCCAG CGGCTAACCCGGTTTTTTATCGCACTTACAGCCGCCGCACCTCGTCGGGACGAGAAAGCTGGAACGAAGTCAGCACACGC AACCTCCAAGGACTGCAGCAACTCGGCAAACTCAGAGCTGAGGAGGTAGCGCTGATGTCGCGCATGCAAGCCGAGAAAAA GGCTCTCCCCTCTGGTCGTTGGCTATGGATCGGTGGAACTGATTGGATCGAAAGAGCAGAGAATTTCTCAGGTGCCTATA ACTGCACATCCACCAACCTGGTGGACTGGGAAGCCTTTGGTCTAATGATGGACCTTGCGATGATGGGCTGCGGAACTGGT GCTGTCATTGAACCTCACTTGATTGATCAGCTTCCGGTGGTTCGCAACCCCATCAAAATCGTTGGCGTCACAGATATTGG CCTAACAGCAGCACATCAAAGACAAGAGCAGACAACGCACAGCATTGAAAACGACAACGTCTTGATCAAGGTTGGAGACA CACGTCGTGGCTGGGTTGACAGCTATCAGTTATTACTCGAACTATGCAGCGATGAGCGCTTCGCTGGACGAACCATCAAT GTGAGTATTGACCTTTCAGACGTAAGGCCAGTAGGCGAGACCCTCAAGGGCTTTGGTGGCATGGCCAATCCAGTGAAGCT GAAGGATCTTTATACCCGTGTCGCTCGACTGCTTGGTAAAGCAGTCGGCCGTCGCCTCACTTCAGTGGAGTGTTGCCTCT TAATCGACGAAGCCGCAGTAACAATCGTGGCAGGCAACATTCGCCGCAGTGCTGGCATGCGTCAGTTCTCGGCGGAAGAT CTTGCGGCTGCAGAAGCCAAAGAAAATCTCTGGCAACAAGATGCCGAAGGTAATTGGCGCATCGATCCCGAAAAAGATGC GCTACGCATGGCCAATCACACCAGGGTTTACCACAACAGACCGAGCCGATCGATTGTGGTTGAAGCCGTAAGAAAACAAT TCCATTCTGGAGAGGGTGCCATTCAATTCGCACCAGAGGCCATTGCTCGCTCCAATGCAGACCTGCTCACCACACAAGAA TTACGCCAGGAATTCATTGGGATCTACTGCGATCAGGGAAAAGACGAAGCAGGTCGCTGGTTGCAGACCAACCACGGTCC GATCGATGCCAGCGAACTAGAGCATCGACTAGGCCGCTATGGCCTAAACCCATGCGGGGAAATTCTTGGAGCCGACTTTC ACTGCAATTTGGCCGAGATCCATCTCAACCAAATCGACCCTTGCGATGAAGACGGTCAAGCCGATGCTTTCAAAGCTGCT GCTCTATCTGTTGCCTGCCTACTAAACCATCGCTTTGAAGTTCCCAGATATCGCCAAAGCCGTGCCTGGGATCCAATTGT GGGCGTGAGTTTTACTGGTTTATTTGACTTCTTCGTCCATGCCTTCGGTACTGCCTGGCTCAGATGGTGGGAAAACGGTC GACCAGACACAGATGAAGGTCGCCAATTCAAGCAAAAGGAAGCATCCTTTTTGATCCGTTGGAAAAAAATAGTCAACGAA ACTGTCTGGGACTATTGCGATCGCCACGAGTTGCGTCGCCCTAGCCGTTGCACCACAGTTCAACCAGCCGGAACGAAAAG TCTGCTTACAGGAGCAGCGCCGGGATGGCATCCTCCTAAGGCCCAGCGTTTCATTCGTCGGATTACCTTCCGCAAGAATG ATCCAGTGGCGATGGCATGTATGGACTACGGATACACCGTTGTGCCGTCTCAATCTGATAAAGATGAGCAGGGTCGCTTG CTGGATGATCCATTTGATCCACGCTGCAGCGAATGGTTGGTTGAAATCCCCACGGAAGTCAGCTGGGCCAACCTGCCTGG AGCCGATGCTGTCAATATCAATAACTTCTCAGCACTGGCTCAATTTGATTTCTACATGCAAGTGCAAAGCCATTACACGG CCCACAACACTTCAGCGACGATCGAACTGCGTGAGGATGAGATAGAGAGTCTGGGCGAAGCATTGCATCAGGCCATTGAC AACAGTGAGGGCTACATCTCTGCTGCGCTGCTTGCTCGCTTCGATGCCCACAATGCCACCTTCCCGCGCTTGCCGTTTGA ACCGATCGATGCAAACACATTCGAGCGCCTGCAAGCAGAGGTGGTTAATCGGAGGGTGAGGAGTAACTTCTTCGAAGCTC TTCACTCCTATGACCAAGGTGAACTGATGGAGGCGGGGCCGGCAGGCTGTGACTCAGACAAATGCCTACTTCCACTTGCC AAACCTGGGAGCTGA
Upstream 100 bases:
>100_bases AGGCCCTGGCCTGAAGCGGATCATCCATTAACTCCGGCTCAGGCAAACGCTTCACAAGATCTCAATCAGATTTCTCACTA GTCTCAACCAGGCACTGTCG
Downstream 100 bases:
>100_bases CAAAAACGCTGATGGGATCCGTGCTGGATGGTTCACCAGGACGGATCTCTAGGCAAGAAGCATAAAATCCTGACGAAACC AAATCAATTGGTTGGTAAAG
Product: ribonucleotide reductase (class II)
Products: NA
Alternate protein names: RTPR [H]
Number of amino acids: Translated: 804; Mature: 804
Protein sequence:
>804_residues MVLLKLADTMSGGSVPILIGISQPMTLTSSRPEIAMTALEASGQRGDFPATAPAANPVFYRTYSRRTSSGRESWNEVSTR NLQGLQQLGKLRAEEVALMSRMQAEKKALPSGRWLWIGGTDWIERAENFSGAYNCTSTNLVDWEAFGLMMDLAMMGCGTG AVIEPHLIDQLPVVRNPIKIVGVTDIGLTAAHQRQEQTTHSIENDNVLIKVGDTRRGWVDSYQLLLELCSDERFAGRTIN VSIDLSDVRPVGETLKGFGGMANPVKLKDLYTRVARLLGKAVGRRLTSVECCLLIDEAAVTIVAGNIRRSAGMRQFSAED LAAAEAKENLWQQDAEGNWRIDPEKDALRMANHTRVYHNRPSRSIVVEAVRKQFHSGEGAIQFAPEAIARSNADLLTTQE LRQEFIGIYCDQGKDEAGRWLQTNHGPIDASELEHRLGRYGLNPCGEILGADFHCNLAEIHLNQIDPCDEDGQADAFKAA ALSVACLLNHRFEVPRYRQSRAWDPIVGVSFTGLFDFFVHAFGTAWLRWWENGRPDTDEGRQFKQKEASFLIRWKKIVNE TVWDYCDRHELRRPSRCTTVQPAGTKSLLTGAAPGWHPPKAQRFIRRITFRKNDPVAMACMDYGYTVVPSQSDKDEQGRL LDDPFDPRCSEWLVEIPTEVSWANLPGADAVNINNFSALAQFDFYMQVQSHYTAHNTSATIELREDEIESLGEALHQAID NSEGYISAALLARFDAHNATFPRLPFEPIDANTFERLQAEVVNRRVRSNFFEALHSYDQGELMEAGPAGCDSDKCLLPLA KPGS
Sequences:
>Translated_804_residues MVLLKLADTMSGGSVPILIGISQPMTLTSSRPEIAMTALEASGQRGDFPATAPAANPVFYRTYSRRTSSGRESWNEVSTR NLQGLQQLGKLRAEEVALMSRMQAEKKALPSGRWLWIGGTDWIERAENFSGAYNCTSTNLVDWEAFGLMMDLAMMGCGTG AVIEPHLIDQLPVVRNPIKIVGVTDIGLTAAHQRQEQTTHSIENDNVLIKVGDTRRGWVDSYQLLLELCSDERFAGRTIN VSIDLSDVRPVGETLKGFGGMANPVKLKDLYTRVARLLGKAVGRRLTSVECCLLIDEAAVTIVAGNIRRSAGMRQFSAED LAAAEAKENLWQQDAEGNWRIDPEKDALRMANHTRVYHNRPSRSIVVEAVRKQFHSGEGAIQFAPEAIARSNADLLTTQE LRQEFIGIYCDQGKDEAGRWLQTNHGPIDASELEHRLGRYGLNPCGEILGADFHCNLAEIHLNQIDPCDEDGQADAFKAA ALSVACLLNHRFEVPRYRQSRAWDPIVGVSFTGLFDFFVHAFGTAWLRWWENGRPDTDEGRQFKQKEASFLIRWKKIVNE TVWDYCDRHELRRPSRCTTVQPAGTKSLLTGAAPGWHPPKAQRFIRRITFRKNDPVAMACMDYGYTVVPSQSDKDEQGRL LDDPFDPRCSEWLVEIPTEVSWANLPGADAVNINNFSALAQFDFYMQVQSHYTAHNTSATIELREDEIESLGEALHQAID NSEGYISAALLARFDAHNATFPRLPFEPIDANTFERLQAEVVNRRVRSNFFEALHSYDQGELMEAGPAGCDSDKCLLPLA KPGS >Mature_804_residues MVLLKLADTMSGGSVPILIGISQPMTLTSSRPEIAMTALEASGQRGDFPATAPAANPVFYRTYSRRTSSGRESWNEVSTR NLQGLQQLGKLRAEEVALMSRMQAEKKALPSGRWLWIGGTDWIERAENFSGAYNCTSTNLVDWEAFGLMMDLAMMGCGTG AVIEPHLIDQLPVVRNPIKIVGVTDIGLTAAHQRQEQTTHSIENDNVLIKVGDTRRGWVDSYQLLLELCSDERFAGRTIN VSIDLSDVRPVGETLKGFGGMANPVKLKDLYTRVARLLGKAVGRRLTSVECCLLIDEAAVTIVAGNIRRSAGMRQFSAED LAAAEAKENLWQQDAEGNWRIDPEKDALRMANHTRVYHNRPSRSIVVEAVRKQFHSGEGAIQFAPEAIARSNADLLTTQE LRQEFIGIYCDQGKDEAGRWLQTNHGPIDASELEHRLGRYGLNPCGEILGADFHCNLAEIHLNQIDPCDEDGQADAFKAA ALSVACLLNHRFEVPRYRQSRAWDPIVGVSFTGLFDFFVHAFGTAWLRWWENGRPDTDEGRQFKQKEASFLIRWKKIVNE TVWDYCDRHELRRPSRCTTVQPAGTKSLLTGAAPGWHPPKAQRFIRRITFRKNDPVAMACMDYGYTVVPSQSDKDEQGRL LDDPFDPRCSEWLVEIPTEVSWANLPGADAVNINNFSALAQFDFYMQVQSHYTAHNTSATIELREDEIESLGEALHQAID NSEGYISAALLARFDAHNATFPRLPFEPIDANTFERLQAEVVNRRVRSNFFEALHSYDQGELMEAGPAGCDSDKCLLPLA KPGS
Specific function: Unknown
COG id: COG1372
COG function: function code L; Intein/homing endonuclease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class II ribonucleoside-triphosphate reductase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000788 - InterPro: IPR013345 [H]
Pfam domain/function: PF02867 Ribonuc_red_lgC [H]
EC number: =1.17.4.2 [H]
Molecular weight: Translated: 89690; Mature: 89690
Theoretical pI: Translated: 5.56; Mature: 5.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVLLKLADTMSGGSVPILIGISQPMTLTSSRPEIAMTALEASGQRGDFPATAPAANPVFY CEEEEEECCCCCCCEEEEEECCCCCEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEE RTYSRRTSSGRESWNEVSTRNLQGLQQLGKLRAEEVALMSRMQAEKKALPSGRWLWIGGT EEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCH DWIERAENFSGAYNCTSTNLVDWEAFGLMMDLAMMGCGTGAVIEPHLIDQLPVVRNPIKI HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEECCHHHHCCCHHCCCEEE VGVTDIGLTAAHQRQEQTTHSIENDNVLIKVGDTRRGWVDSYQLLLELCSDERFAGRTIN EEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEE VSIDLSDVRPVGETLKGFGGMANPVKLKDLYTRVARLLGKAVGRRLTSVECCLLIDEAAV EEEEHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEE TIVAGNIRRSAGMRQFSAEDLAAAEAKENLWQQDAEGNWRIDPEKDALRMANHTRVYHNR EEEECCHHHHCCCCHHCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCEEECCC PSRSIVVEAVRKQFHSGEGAIQFAPEAIARSNADLLTTQELRQEFIGIYCDQGKDEAGRW CCHHHHHHHHHHHHCCCCCCEEECCHHHHCCCCCCEEHHHHHHHHHEEEECCCCCCCCCC LQTNHGPIDASELEHRLGRYGLNPCGEILGADFHCNLAEIHLNQIDPCDEDGQADAFKAA EECCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCHHEEECCCCCCCCCCCCCHHHHHH ALSVACLLNHRFEVPRYRQSRAWDPIVGVSFTGLFDFFVHAFGTAWLRWWENGRPDTDEG HHHHHHHHHCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH RQFKQKEASFLIRWKKIVNETVWDYCDRHELRRPSRCTTVQPAGTKSLLTGAAPGWHPPK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCHH AQRFIRRITFRKNDPVAMACMDYGYTVVPSQSDKDEQGRLLDDPFDPRCSEWLVEIPTEV HHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCC SWANLPGADAVNINNFSALAQFDFYMQVQSHYTAHNTSATIELREDEIESLGEALHQAID CCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHEECCCCEEEEECHHHHHHHHHHHHHHHC NSEGYISAALLARFDAHNATFPRLPFEPIDANTFERLQAEVVNRRVRSNFFEALHSYDQG CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC ELMEAGPAGCDSDKCLLPLAKPGS CCHHCCCCCCCCCCEEEECCCCCC >Mature Secondary Structure MVLLKLADTMSGGSVPILIGISQPMTLTSSRPEIAMTALEASGQRGDFPATAPAANPVFY CEEEEEECCCCCCCEEEEEECCCCCEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEE RTYSRRTSSGRESWNEVSTRNLQGLQQLGKLRAEEVALMSRMQAEKKALPSGRWLWIGGT EEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCH DWIERAENFSGAYNCTSTNLVDWEAFGLMMDLAMMGCGTGAVIEPHLIDQLPVVRNPIKI HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEECCHHHHCCCHHCCCEEE VGVTDIGLTAAHQRQEQTTHSIENDNVLIKVGDTRRGWVDSYQLLLELCSDERFAGRTIN EEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEE VSIDLSDVRPVGETLKGFGGMANPVKLKDLYTRVARLLGKAVGRRLTSVECCLLIDEAAV EEEEHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEE TIVAGNIRRSAGMRQFSAEDLAAAEAKENLWQQDAEGNWRIDPEKDALRMANHTRVYHNR EEEECCHHHHCCCCHHCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCEEECCC PSRSIVVEAVRKQFHSGEGAIQFAPEAIARSNADLLTTQELRQEFIGIYCDQGKDEAGRW CCHHHHHHHHHHHHCCCCCCEEECCHHHHCCCCCCEEHHHHHHHHHEEEECCCCCCCCCC LQTNHGPIDASELEHRLGRYGLNPCGEILGADFHCNLAEIHLNQIDPCDEDGQADAFKAA EECCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCHHEEECCCCCCCCCCCCCHHHHHH ALSVACLLNHRFEVPRYRQSRAWDPIVGVSFTGLFDFFVHAFGTAWLRWWENGRPDTDEG HHHHHHHHHCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH RQFKQKEASFLIRWKKIVNETVWDYCDRHELRRPSRCTTVQPAGTKSLLTGAAPGWHPPK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCHH AQRFIRRITFRKNDPVAMACMDYGYTVVPSQSDKDEQGRLLDDPFDPRCSEWLVEIPTEV HHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCC SWANLPGADAVNINNFSALAQFDFYMQVQSHYTAHNTSATIELREDEIESLGEALHQAID CCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHEECCCCEEEEECHHHHHHHHHHHHHHHC NSEGYISAALLARFDAHNATFPRLPFEPIDANTFERLQAEVVNRRVRSNFFEALHSYDQG CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC ELMEAGPAGCDSDKCLLPLAKPGS CCHHCCCCCCCCCCEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA