| Definition | Prochlorococcus marinus str. MIT 9313 chromosome, complete genome. |
|---|---|
| Accession | NC_005071 |
| Length | 2,410,873 |
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The map label for this gene is 33862789
Identifier: 33862789
GI number: 33862789
Start: 565605
End: 567134
Strand: Direct
Name: 33862789
Synonym: PMT0516
Alternate gene names: NA
Gene position: 565605-567134 (Clockwise)
Preceding gene: 33862787
Following gene: 33862791
Centisome position: 23.46
GC content: 54.38
Gene sequence:
>1530_bases TTGCCCCGAACGAAAACAGCTACAACCAAAGCAAAGGCAGCCCCACTTAGACGTGCTGGTCGCACAGCCTCCCCGCCAAG GCGGCGACGGCGGCCTCAGCGTAGGAGATCTCAGCTATCCAAACGCTTACTTTTGATTGGGTTGCCGCTCACTGTTTTTG CTGGTCTTGTGGCTCTGGCTCCGAAAGCACCCGAACGCTTCAACCCAAGTCAAGTCGTCCCAGAGAGCATTAAGAGACAA GTGAAAGCTCCCTTTCGCTATCGACCAAACGATGATGTGTACGCACTCGATTTTGATCCACGTAAAGTGAAGTTCGGCCT TCTTGAAGGCTGGGATAGAGAACAGGACGCTTTCCAGGACTCCTCTTCACTGGCATTTGTCTCTGGTCCGATGTATGAGC GGCATGTCGACATTGGTGGCCAAGAGATCACAGTTCCCCTTGGAGATCTCAAGTTGGGTCAACGCGTCTGGAGAAGTCGT AATCGCGCTGCCTCCATCCAACGCGCCTACATAGGCATTCGCTACAACGGCAGAGTTGACTTCGGTTACGGACAACTAAC AGCCAATCGTGCCTCCACCTACGACACCTTTGTCGGTGGACTACACAGCATTTACAACGATTTTGAAGTGCCTCCTCCTA GCTACAAGGGCGCATACAGCATCAGCATGGGCCAGCGGATCCGCTACTACCTTCCTCGCATCAGGATGATCATGGGCCTG CGACAAGACGGGCGTATAGAGGTATTAATGAGCAGAGATGGGTTAACCCTTGAACAGAGCAAGGATTTAGCCCGTAGCCG TGGCCTTGTGGCGGCTTACATGCCAGACCATGCCTCCAAGAGTCGTTTGATCATTCCAGGCGTCAAGGGCTTCACGGAGG ATGACGCCAATTGGATAAGCGGTGGTGTCACTAGCTTTGTGCATGTTCCCTATCTCCTGAGGCTCAGTGAACGGCGCTTC CAACTTCAGGGCACCTTGGCAGCCTCTCTCAGCCCCAGGATTGATGGGGCGCAAGACTGCAATGGAGTTAATTGCCAACA ATGGCCGGGCGGAAGACTGTTCGACCGGGCCCTAGCTGGACTGAATCGATTGATCGAGCAAGGTGTGGAGCCCATCGCCA GGATGATCTGGGCGCCCAAGCCCGGCACTACCATTCCCAGCGATAGCCAAAGCACTTTTCTGGCTCGTAATAGTGATCGA GCTCCTTTACGGGAACCGCCGATTACGGCAGATCCACTGGTATTGCTCGAAACGCCCGAAAAGTTCGATTCACCCTCGAA TCTTCAAGATAACGATCCCTTGAGAACGGATCTGGAATGGGGCAACCCCCTGCTTCCACCGGATCTGCCACCACCTTTGT TGCTTCGGGAAGGCGAGGCCCTGCCTCCAGCCCAGGAGATCCATCAACGAAGAGACCCGATCTATGACAATCCAGCCGAA ATCGAGCCACCCCCACTGATCGGAGTTCCACCACTACCGCTATTACCTCCACCACCGCTGTCTGCATCAGAGGTAGGACT GATCAATTAA
Upstream 100 bases:
>100_bases ATTCACTAACGACTTCTTTCATCTAGGGAGTTGACGGGAAGCCATTGATGCAGTGAGCTTTAGCTGAATTTGCTGATGGT GAAGGTAGCCATTTTTTTAC
Downstream 100 bases:
>100_bases CAGTTCAATCAATCGTTTTCATAGCAGGCTCCTAACGATAAGGACTTGCCAATTTGAATCGTGTTGAATTCCCTATGCCT CAAGATTGGCTATTGCATAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 509; Mature: 508
Protein sequence:
>509_residues MPRTKTATTKAKAAPLRRAGRTASPPRRRRRPQRRRSQLSKRLLLIGLPLTVFAGLVALAPKAPERFNPSQVVPESIKRQ VKAPFRYRPNDDVYALDFDPRKVKFGLLEGWDREQDAFQDSSSLAFVSGPMYERHVDIGGQEITVPLGDLKLGQRVWRSR NRAASIQRAYIGIRYNGRVDFGYGQLTANRASTYDTFVGGLHSIYNDFEVPPPSYKGAYSISMGQRIRYYLPRIRMIMGL RQDGRIEVLMSRDGLTLEQSKDLARSRGLVAAYMPDHASKSRLIIPGVKGFTEDDANWISGGVTSFVHVPYLLRLSERRF QLQGTLAASLSPRIDGAQDCNGVNCQQWPGGRLFDRALAGLNRLIEQGVEPIARMIWAPKPGTTIPSDSQSTFLARNSDR APLREPPITADPLVLLETPEKFDSPSNLQDNDPLRTDLEWGNPLLPPDLPPPLLLREGEALPPAQEIHQRRDPIYDNPAE IEPPPLIGVPPLPLLPPPPLSASEVGLIN
Sequences:
>Translated_509_residues MPRTKTATTKAKAAPLRRAGRTASPPRRRRRPQRRRSQLSKRLLLIGLPLTVFAGLVALAPKAPERFNPSQVVPESIKRQ VKAPFRYRPNDDVYALDFDPRKVKFGLLEGWDREQDAFQDSSSLAFVSGPMYERHVDIGGQEITVPLGDLKLGQRVWRSR NRAASIQRAYIGIRYNGRVDFGYGQLTANRASTYDTFVGGLHSIYNDFEVPPPSYKGAYSISMGQRIRYYLPRIRMIMGL RQDGRIEVLMSRDGLTLEQSKDLARSRGLVAAYMPDHASKSRLIIPGVKGFTEDDANWISGGVTSFVHVPYLLRLSERRF QLQGTLAASLSPRIDGAQDCNGVNCQQWPGGRLFDRALAGLNRLIEQGVEPIARMIWAPKPGTTIPSDSQSTFLARNSDR APLREPPITADPLVLLETPEKFDSPSNLQDNDPLRTDLEWGNPLLPPDLPPPLLLREGEALPPAQEIHQRRDPIYDNPAE IEPPPLIGVPPLPLLPPPPLSASEVGLIN >Mature_508_residues PRTKTATTKAKAAPLRRAGRTASPPRRRRRPQRRRSQLSKRLLLIGLPLTVFAGLVALAPKAPERFNPSQVVPESIKRQV KAPFRYRPNDDVYALDFDPRKVKFGLLEGWDREQDAFQDSSSLAFVSGPMYERHVDIGGQEITVPLGDLKLGQRVWRSRN RAASIQRAYIGIRYNGRVDFGYGQLTANRASTYDTFVGGLHSIYNDFEVPPPSYKGAYSISMGQRIRYYLPRIRMIMGLR QDGRIEVLMSRDGLTLEQSKDLARSRGLVAAYMPDHASKSRLIIPGVKGFTEDDANWISGGVTSFVHVPYLLRLSERRFQ LQGTLAASLSPRIDGAQDCNGVNCQQWPGGRLFDRALAGLNRLIEQGVEPIARMIWAPKPGTTIPSDSQSTFLARNSDRA PLREPPITADPLVLLETPEKFDSPSNLQDNDPLRTDLEWGNPLLPPDLPPPLLLREGEALPPAQEIHQRRDPIYDNPAEI EPPPLIGVPPLPLLPPPPLSASEVGLIN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 56767; Mature: 56636
Theoretical pI: Translated: 10.21; Mature: 10.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRTKTATTKAKAAPLRRAGRTASPPRRRRRPQRRRSQLSKRLLLIGLPLTVFAGLVALA CCCCCCCCCHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHEEEEECCHHHHHHHHHHC PKAPERFNPSQVVPESIKRQVKAPFRYRPNDDVYALDFDPRKVKFGLLEGWDREQDAFQD CCCCCCCCCHHCCHHHHHHHHCCCCCCCCCCCEEEEECCCCEEEEECCCCCCCHHHHHCC SSSLAFVSGPMYERHVDIGGQEITVPLGDLKLGQRVWRSRNRAASIQRAYIGIRYNGRVD CCCEEEEECCCEEEEECCCCCEEEEECCCHHHHHHHHHCCHHHHHEEEEEEEEEECCEEE FGYGQLTANRASTYDTFVGGLHSIYNDFEVPPPSYKGAYSISMGQRIRYYLPRIRMIMGL CCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHCC RQDGRIEVLMSRDGLTLEQSKDLARSRGLVAAYMPDHASKSRLIIPGVKGFTEDDANWIS CCCCCEEEEECCCCCCHHHHHHHHHHCCEEEEECCCCCCCCEEEECCCCCCCCCCCHHHH GGVTSFVHVPYLLRLSERRFQLQGTLAASLSPRIDGAQDCNGVNCQQWPGGRLFDRALAG HHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH LNRLIEQGVEPIARMIWAPKPGTTIPSDSQSTFLARNSDRAPLREPPITADPLVLLETPE HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEECCH KFDSPSNLQDNDPLRTDLEWGNPLLPPDLPPPLLLREGEALPPAQEIHQRRDPIYDNPAE HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHCCCCCCCCCC IEPPPLIGVPPLPLLPPPPLSASEVGLIN CCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure PRTKTATTKAKAAPLRRAGRTASPPRRRRRPQRRRSQLSKRLLLIGLPLTVFAGLVALA CCCCCCCCHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHEEEEECCHHHHHHHHHHC PKAPERFNPSQVVPESIKRQVKAPFRYRPNDDVYALDFDPRKVKFGLLEGWDREQDAFQD CCCCCCCCCHHCCHHHHHHHHCCCCCCCCCCCEEEEECCCCEEEEECCCCCCCHHHHHCC SSSLAFVSGPMYERHVDIGGQEITVPLGDLKLGQRVWRSRNRAASIQRAYIGIRYNGRVD CCCEEEEECCCEEEEECCCCCEEEEECCCHHHHHHHHHCCHHHHHEEEEEEEEEECCEEE FGYGQLTANRASTYDTFVGGLHSIYNDFEVPPPSYKGAYSISMGQRIRYYLPRIRMIMGL CCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHCC RQDGRIEVLMSRDGLTLEQSKDLARSRGLVAAYMPDHASKSRLIIPGVKGFTEDDANWIS CCCCCEEEEECCCCCCHHHHHHHHHHCCEEEEECCCCCCCCEEEECCCCCCCCCCCHHHH GGVTSFVHVPYLLRLSERRFQLQGTLAASLSPRIDGAQDCNGVNCQQWPGGRLFDRALAG HHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH LNRLIEQGVEPIARMIWAPKPGTTIPSDSQSTFLARNSDRAPLREPPITADPLVLLETPE HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEECCH KFDSPSNLQDNDPLRTDLEWGNPLLPPDLPPPLLLREGEALPPAQEIHQRRDPIYDNPAE HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHCCCCCCCCCC IEPPPLIGVPPLPLLPPPPLSASEVGLIN CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA