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The map label for this gene is ylbL [H]

Identifier: 30263998

GI number: 30263998

Start: 3791072

End: 3792094

Strand: Reverse

Name: ylbL [H]

Synonym: BA_4136

Alternate gene names: 30263998

Gene position: 3792094-3791072 (Counterclockwise)

Preceding gene: 30263999

Following gene: 30263995

Centisome position: 72.54

GC content: 37.83

Gene sequence:

>1023_bases
ATGTTTAAGCGTTTTCGGTTTATATATGCAATTTTAATAGGGGTTATATTGGCAATGTTACTTGTTTACGTACGCCTGCC
GTATTATATAACGAAACCAGGAATGGCTGCCAAATTAGAGCCTTACGTTCAAGTGGAGGGGGGGACAAAAGAGTCTGGTG
ATTTTATGCTTGTTACGGTTTCGATGGGACCAGCAAATGTAGTGAATTTAATAGCGGCACAGTTTAATAAATATACACAT
ATTTCAAAAGCGGAAGAAATATTGCAAAAAGGTGAAAGTGATGAAGAATATCAATTTCGCCAAAATTATGCGATGAAAGA
TTCGCAAAATGCAGCGATCTATAATGCTTATAAACGTGCAAATCGTACTGTTTCTTTTGAAAATAAAGGTGTGTTGGTTG
CTGGTGTAGCGAAAGGGATGCCGTCAGAAGGAAAGCTTAAACTTGGAGATGTCATCATTGCTGTCGACGGAAAAACATTT
GAAAAGACGGAACAATTTATTGAATATATGACAGGGGAAAAAGAAGGGGATACAGTAAATATTGAGTACAAGAGGGATGG
GAAACAGTTAAAAGAAAATTTAAATGTAAAGACTATTCCGAATGGAAATGGACGCGTTGGTATAGGTGTTTCTATCGTTA
CGGAAAGAGAATTAGTGGTAGATCCAAAAGTGAAAATTGACTCTCATGAAATAGGTGGACCATCGGCAGGTCTCATGTTT
ACATTAGAAATATATAATCAACTGGTGGACGAGGATTTAACAAGAGGACATGAAATAGCTGGAACAGGTACGATTAATGA
AAAGGGAGAAATTGGCCCGATTGGCGGTATTCAGCAAAAAGTGGTCGCTGCAAGTGATGCTGGTGCTGAAGTGTTCTTTG
CGCCAAATGAAAAAGGTGCGGAGAAATCGAATTATAAAGATGCACTTGAGGCTGCGAAAGATATTAAAACGAAAATGAAA
GTTGTGCCAGTTGATACGTTGGATGATGCATTAATGTATCTGGAAAAAATGGGGAATAAATAA

Upstream 100 bases:

>100_bases
TTTACAAACATTGAAGACATTATTCGAGTTGGAGAGGTAGAAGCAGAAAAGCATGTTGCAAATATTCATTTATTAATTGA
GCAGTGGAAGGAGAAACATA

Downstream 100 bases:

>100_bases
AAAAATCTCTCTGAAAAAGAGAGGTTTTTTTATAGGAATTTTGCAGTTGTTTCATCATAACGAATTGGGTGATGTGTGGC
ATCTCGTTTTAGTAGTTGCG

Product: PDZ domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 340

Protein sequence:

>340_residues
MFKRFRFIYAILIGVILAMLLVYVRLPYYITKPGMAAKLEPYVQVEGGTKESGDFMLVTVSMGPANVVNLIAAQFNKYTH
ISKAEEILQKGESDEEYQFRQNYAMKDSQNAAIYNAYKRANRTVSFENKGVLVAGVAKGMPSEGKLKLGDVIIAVDGKTF
EKTEQFIEYMTGEKEGDTVNIEYKRDGKQLKENLNVKTIPNGNGRVGIGVSIVTERELVVDPKVKIDSHEIGGPSAGLMF
TLEIYNQLVDEDLTRGHEIAGTGTINEKGEIGPIGGIQQKVVAASDAGAEVFFAPNEKGAEKSNYKDALEAAKDIKTKMK
VVPVDTLDDALMYLEKMGNK

Sequences:

>Translated_340_residues
MFKRFRFIYAILIGVILAMLLVYVRLPYYITKPGMAAKLEPYVQVEGGTKESGDFMLVTVSMGPANVVNLIAAQFNKYTH
ISKAEEILQKGESDEEYQFRQNYAMKDSQNAAIYNAYKRANRTVSFENKGVLVAGVAKGMPSEGKLKLGDVIIAVDGKTF
EKTEQFIEYMTGEKEGDTVNIEYKRDGKQLKENLNVKTIPNGNGRVGIGVSIVTERELVVDPKVKIDSHEIGGPSAGLMF
TLEIYNQLVDEDLTRGHEIAGTGTINEKGEIGPIGGIQQKVVAASDAGAEVFFAPNEKGAEKSNYKDALEAAKDIKTKMK
VVPVDTLDDALMYLEKMGNK
>Mature_340_residues
MFKRFRFIYAILIGVILAMLLVYVRLPYYITKPGMAAKLEPYVQVEGGTKESGDFMLVTVSMGPANVVNLIAAQFNKYTH
ISKAEEILQKGESDEEYQFRQNYAMKDSQNAAIYNAYKRANRTVSFENKGVLVAGVAKGMPSEGKLKLGDVIIAVDGKTF
EKTEQFIEYMTGEKEGDTVNIEYKRDGKQLKENLNVKTIPNGNGRVGIGVSIVTERELVVDPKVKIDSHEIGGPSAGLMF
TLEIYNQLVDEDLTRGHEIAGTGTINEKGEIGPIGGIQQKVVAASDAGAEVFFAPNEKGAEKSNYKDALEAAKDIKTKMK
VVPVDTLDDALMYLEKMGNK

Specific function: Unknown

COG id: COG3480

COG function: function code T; Predicted secreted protein containing a PDZ domain

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PDZ (DHR) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478
- InterPro:   IPR008269
- InterPro:   IPR020568 [H]

Pfam domain/function: PF05362 Lon_C; PF00595 PDZ [H]

EC number: 3.4.21.53

Molecular weight: Translated: 37413; Mature: 37413

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKRFRFIYAILIGVILAMLLVYVRLPYYITKPGMAAKLEPYVQVEGGTKESGDFMLVTV
CCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCEEEEECCCCCCCCEEEEEE
SMGPANVVNLIAAQFNKYTHISKAEEILQKGESDEEYQFRQNYAMKDSQNAAIYNAYKRA
ECCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHC
NRTVSFENKGVLVAGVAKGMPSEGKLKLGDVIIAVDGKTFEKTEQFIEYMTGEKEGDTVN
CCEEEECCCCEEEEECCCCCCCCCCEEECCEEEEECCCCHHHHHHHHHHHCCCCCCCEEE
IEYKRDGKQLKENLNVKTIPNGNGRVGIGVSIVTERELVVDPKVKIDSHEIGGPSAGLMF
EEECCCHHHHHHCCCEEECCCCCCEEEEEEEEEECCEEEECCCEEECCCCCCCCCCCCEE
TLEIYNQLVDEDLTRGHEIAGTGTINEKGEIGPIGGIQQKVVAASDAGAEVFFAPNEKGA
EHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCHHHEEEECCCCCEEEECCCCCCC
EKSNYKDALEAAKDIKTKMKVVPVDTLDDALMYLEKMGNK
CCCHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MFKRFRFIYAILIGVILAMLLVYVRLPYYITKPGMAAKLEPYVQVEGGTKESGDFMLVTV
CCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCEEEEECCCCCCCCEEEEEE
SMGPANVVNLIAAQFNKYTHISKAEEILQKGESDEEYQFRQNYAMKDSQNAAIYNAYKRA
ECCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHC
NRTVSFENKGVLVAGVAKGMPSEGKLKLGDVIIAVDGKTFEKTEQFIEYMTGEKEGDTVN
CCEEEECCCCEEEEECCCCCCCCCCEEECCEEEEECCCCHHHHHHHHHHHCCCCCCCEEE
IEYKRDGKQLKENLNVKTIPNGNGRVGIGVSIVTERELVVDPKVKIDSHEIGGPSAGLMF
EEECCCHHHHHHCCCEEECCCCCCEEEEEEEEEECCEEEECCCEEECCCCCCCCCCCCEE
TLEIYNQLVDEDLTRGHEIAGTGTINEKGEIGPIGGIQQKVVAASDAGAEVFFAPNEKGA
EHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCHHHEEEECCCCCEEEECCCCCCC
EKSNYKDALEAAKDIKTKMKVVPVDTLDDALMYLEKMGNK
CCCHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]