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The map label for this gene is yodH [H]

Identifier: 30263532

GI number: 30263532

Start: 3347407

End: 3348126

Strand: Reverse

Name: yodH [H]

Synonym: BA_3641

Alternate gene names: 30263532

Gene position: 3348126-3347407 (Counterclockwise)

Preceding gene: 30263533

Following gene: 30263530

Centisome position: 64.05

GC content: 37.64

Gene sequence:

>720_bases
ATGAAACGAAACACATACATCGATTTCTTAGCGTATTACGGAATAGGGAGTGCTCACCCTGGTGGTTTTACGTTAACAAA
ACAATTGTTAGCACAACTGCCTTTTAGATATGGAGCTAACGTCCTTGAGATAGGCTGCGGTACGGGGAAAACAGCAGCGT
ATATGACAAAAGACTGTGGTTATAAAGTAACGGCGGTTGAAAAGAATGAGATTATGATTCAAAAGGCGAAAGATAGGTGG
TCGTCTGAAGGAATAGATATTCAATTAATTGAAGGAAAGGCAGAGCAATTACCTTGTTTGCATGACTCATTTGAATTCGT
ACTCGGAGAATCGATACTTGCTTTTACAGAGAAAGAAAGGGTTATCTCGGAGTGCTATCGTGTATTACAGAAGGACGGAA
AGTTAGTTGTAATTGAAATGATTATTAATGCCCACATTGGGAGGGAAGAGGAAGAAAAAATCGCTCAATTATATGGCATG
AAAGAACTATTAACTGAGAATGAGTGGGTACAATTATTTCAGAAAGCAAATTTTAAAAGAATTACAATTGCTGGCGGTGG
CACGATTGCAGAAACGATTTCTAGCTATGTAGAAGAGCCAGAATGGAATGTATCACAATTTATTCCGAATGAGTTATATG
AGGCATGGGTACAGCATGAAAATGTACGGCTTATGTACCAACATATTTTAGGGCATCGTATTTTTATATGTGAAAAATAA

Upstream 100 bases:

>100_bases
CATTTTCAAGTTGCTGTATAGCACTTGGAAATGCTTTTTTACGTGCACGATTTTTTGATGGGTGAATATATGTATTATAG
AAAATTAAAAGGAGAATCCC

Downstream 100 bases:

>100_bases
AGAAAAAGAGTTGGCTAAAGGTAGTCAACTCTTTACTATGTTAAATGAAAAATAATGCAGCTAATGTAATTCCGAAGATG
AAACCAAATCCGAGTTCAAC

Product: hypothetical protein

Products: S-Adenosyl-L-Homocysteine; @OCTA02.txt*2- Polyprenyl-3-Methyl-6-Methoxy-1,4-Benzoquinol!; Menaquinol. [C]

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MKRNTYIDFLAYYGIGSAHPGGFTLTKQLLAQLPFRYGANVLEIGCGTGKTAAYMTKDCGYKVTAVEKNEIMIQKAKDRW
SSEGIDIQLIEGKAEQLPCLHDSFEFVLGESILAFTEKERVISECYRVLQKDGKLVVIEMIINAHIGREEEEKIAQLYGM
KELLTENEWVQLFQKANFKRITIAGGGTIAETISSYVEEPEWNVSQFIPNELYEAWVQHENVRLMYQHILGHRIFICEK

Sequences:

>Translated_239_residues
MKRNTYIDFLAYYGIGSAHPGGFTLTKQLLAQLPFRYGANVLEIGCGTGKTAAYMTKDCGYKVTAVEKNEIMIQKAKDRW
SSEGIDIQLIEGKAEQLPCLHDSFEFVLGESILAFTEKERVISECYRVLQKDGKLVVIEMIINAHIGREEEEKIAQLYGM
KELLTENEWVQLFQKANFKRITIAGGGTIAETISSYVEEPEWNVSQFIPNELYEAWVQHENVRLMYQHILGHRIFICEK
>Mature_239_residues
MKRNTYIDFLAYYGIGSAHPGGFTLTKQLLAQLPFRYGANVLEIGCGTGKTAAYMTKDCGYKVTAVEKNEIMIQKAKDRW
SSEGIDIQLIEGKAEQLPCLHDSFEFVLGESILAFTEKERVISECYRVLQKDGKLVVIEMIINAHIGREEEEKIAQLYGM
KELLTENEWVQLFQKANFKRITIAGGGTIAETISSYVEEPEWNVSQFIPNELYEAWVQHENVRLMYQHILGHRIFICEK

Specific function: Methyltransferase Required For The Conversion Of Dimethylmenaquinone (Dmkh2) To Menaquinone (Mkh2) And The Conversion Of 2-Polyprenyl-6-Methoxy-1,4-Benzoquinol (Ddmqh2) To 2-Polyprenyl-3-Methyl-6-Methoxy-1,4-Benzoquinol (Dmqh2). [C]

COG id: COG0500

COG function: function code QR; SAM-dependent methyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013216 [H]

Pfam domain/function: PF08241 Methyltransf_11 [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 27340; Mature: 27340

Theoretical pI: Translated: 5.41; Mature: 5.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRNTYIDFLAYYGIGSAHPGGFTLTKQLLAQLPFRYGANVLEIGCGTGKTAAYMTKDCG
CCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHCCCEEEEECCCCCCCEEEECCCC
YKVTAVEKNEIMIQKAKDRWSSEGIDIQLIEGKAEQLPCLHDSFEFVLGESILAFTEKER
EEEEEEECCHHHEEHHHHHHCCCCCEEEEECCCHHHCCCHHHHHHHHHHHHHHHHHHHHH
VISECYRVLQKDGKLVVIEMIINAHIGREEEEKIAQLYGMKELLTENEWVQLFQKANFKR
HHHHHHHHHHCCCCEEEEEEEHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCE
ITIAGGGTIAETISSYVEEPEWNVSQFIPNELYEAWVQHENVRLMYQHILGHRIFICEK
EEEECCCHHHHHHHHHHCCCCCCHHHHCHHHHHHHHHCCCCHHHHHHHHHCCEEEEECC
>Mature Secondary Structure
MKRNTYIDFLAYYGIGSAHPGGFTLTKQLLAQLPFRYGANVLEIGCGTGKTAAYMTKDCG
CCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHCCCEEEEECCCCCCCEEEECCCC
YKVTAVEKNEIMIQKAKDRWSSEGIDIQLIEGKAEQLPCLHDSFEFVLGESILAFTEKER
EEEEEEECCHHHEEHHHHHHCCCCCEEEEECCCHHHCCCHHHHHHHHHHHHHHHHHHHHH
VISECYRVLQKDGKLVVIEMIINAHIGREEEEKIAQLYGMKELLTENEWVQLFQKANFKR
HHHHHHHHHHCCCCEEEEEEEHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCE
ITIAGGGTIAETISSYVEEPEWNVSQFIPNELYEAWVQHENVRLMYQHILGHRIFICEK
EEEECCCHHHHHHHHHHCCCCCCHHHHCHHHHHHHHHCCCCHHHHHHHHHCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: S-Adenosyl-L-Methionine; 2-Polyprenyl-6- Methoxy-1,4-Benzoquinol; Demethylmenaquinol [C]

Specific reaction: S-Adenosyl-L-Methionine + @OCTA02.txt*2-Polyprenyl-6- Methoxy-1,4-Benzoquinol! = S-Adenosyl-L-Homocysteine + 2- Polyprenyl-3-Methyl-6-Methoxy -1,4-Benzoquinol S-Adenosyl-L-Methionine + Demethylmenaquinol = S-Adenosyl-L-Homocysteine + Menaquinol. [C]

General reaction: Transferring one-carbon groups; Methyltransferases [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]