Click here to switch to the map view.

The map label for this gene is ysdA [H]

Identifier: 30263508

GI number: 30263508

Start: 3324396

End: 3324596

Strand: Reverse

Name: ysdA [H]

Synonym: BA_3615

Alternate gene names: 30263508

Gene position: 3324596-3324396 (Counterclockwise)

Preceding gene: 30263509

Following gene: 30263507

Centisome position: 63.6

GC content: 40.8

Gene sequence:

>201_bases
ATGGGGCTTGATAAACGGAAAGCGAAGAAGAAACAGTGGAGAACGCCAGAAAGTACGTTGTTTTTATCAGCGGCAGCTGG
GGGCGCAGTTGGTGCTTGGATCGGTATGTATACGTTTCACCATAAAACTCATAAAAAGAAATTTGTTTTCGGTATACCGT
TACTTGTCGTTATCACAATATGTTTACTTTTTGCTGTATGA

Upstream 100 bases:

>100_bases
CATCGTTTTTTCATGTTACGATTAAGCGAATTTTTCATAGGGAGAGAAAGCGATGAAATGGATTTATTTTATTCTTATTA
ACGTTATAGCTTTTAGCCTT

Downstream 100 bases:

>100_bases
GAAATGTCGAAAGAATTGCAGATTGATTATTGGTAAAGTGAGCACGTGGGACCGTATAATGGAGAAAAACGAGAAGAGGA
GAAAAGGAAGATGGGGAGTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 66; Mature: 65

Protein sequence:

>66_residues
MGLDKRKAKKKQWRTPESTLFLSAAAGGAVGAWIGMYTFHHKTHKKKFVFGIPLLVVITICLLFAV

Sequences:

>Translated_66_residues
MGLDKRKAKKKQWRTPESTLFLSAAAGGAVGAWIGMYTFHHKTHKKKFVFGIPLLVVITICLLFAV
>Mature_65_residues
GLDKRKAKKKQWRTPESTLFLSAAAGGAVGAWIGMYTFHHKTHKKKFVFGIPLLVVITICLLFAV

Specific function: Unknown

COG id: COG3326

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010718 [H]

Pfam domain/function: PF06961 DUF1294 [H]

EC number: NA

Molecular weight: Translated: 7359; Mature: 7228

Theoretical pI: Translated: 11.11; Mature: 11.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLDKRKAKKKQWRTPESTLFLSAAAGGAVGAWIGMYTFHHKTHKKKFVFGIPLLVVITI
CCCCHHHHHHHHCCCCCHHEEEECCCCCHHHHHHHHHHHHCCCCCCCEEECCHHHHHHHH
CLLFAV
HHHHCC
>Mature Secondary Structure 
GLDKRKAKKKQWRTPESTLFLSAAAGGAVGAWIGMYTFHHKTHKKKFVFGIPLLVVITI
CCCHHHHHHHHCCCCCHHEEEECCCCCHHHHHHHHHHHHCCCCCCCEEECCHHHHHHHH
CLLFAV
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]