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The map label for this gene is yhdP [H]

Identifier: 30262083

GI number: 30262083

Start: 1930356

End: 1931663

Strand: Reverse

Name: yhdP [H]

Synonym: BA_2059

Alternate gene names: 30262083

Gene position: 1931663-1930356 (Counterclockwise)

Preceding gene: 30262084

Following gene: 30262082

Centisome position: 36.95

GC content: 34.48

Gene sequence:

>1308_bases
TTGGACATATTAAATATTTTTCTCATCTTTGTTCTTATCCTTATTTCCGGCTTTTTCGTTGCATCAGAATTCGCTGTTGT
AAAAGTACGAAAAAGTCGAATTGACCAGCTTGCAAACGAAGGCAATAAACAAGCTTTAGCTGCAAGAAGTGTCATTTCTA
ATTTAGATGTTTATTTATCAGCTTGTCAGCTCGGGATTACAATTACTTCTTTAGGGCTTGGTTGGCTTGGTGAACCGACT
GTGGAACATTTACTACGACCGCTCTTTGAAAAGATTAATATTACTGGAACAATGGCAAATACTTTATCCTTTATTATTGC
TTTTAGTGTGATTACATTTTTCCATGTTGTATTAGGTGAATTAGTTCCAAAGTCATTCGCAATTCAAAAAGCAGAAGCGA
TTACACTTAAGTTTGCACGACCACTTATTTTATTTGATAAAATTATGTACCCATTCATTTGGTTACTTAATAGTACTGCT
ATCTTTTTCACAAAACTACTCGGTTTAGAACCTGCGAAAGAAAATGAACTTGCCCATTCTGAAGAGGAACTACGACTCAT
TTTAGGTGAAAGTTTCAAAAGCGGCGAAATCAATCAAACCGAATATAAATATGTAAATAATATTTTTGAATTCGACGACC
GAGTTGCGAAAGAAATTATGGTCCCTCGTACAGAAATGATTTGCTTATCTACTGAAAATACGTTAGAAGAAAATATGGAT
ATCGTCGCAACTGAAAAGTATACACGCTATCCTATCATCGAAAAAGATAAAGATGATATTATCGGTATGATCAATACGAA
AGAAGTATTTCACGATCAAACGAAAGGCATTCATAAGCCACTTGAATCTTACATACATCCAGTACTAACTGTATTTGAAA
CTGTTCCAATTCGTAAAACACTGGTACATCTACAAAAGAATCGCGTTCAGATGGGAATCGTTATGGATGAATATGGTGGT
ACTGCTGGACTTTTAACTATGGAAGATATTCTTGAAGAAATCATTGGAGAAATTCAAGATGAGTTTGATGCAGATGAATC
ACCTATGATTGAAAAACGTACGCCTAAACTTACTGTCCTAGATGGAAAAGTACTTATTTCTGAAGTAAATGATATGTTTG
GCTTACATATTGATGAGAGCGACTTAGATACAATTGGAGGCTGGCTATTATCGCAAGCAGTTGACGTAAATATTGAAGCT
GGCTACTCCATCGAATATGCCGGTTTTCAATTTAAGGCATTAGAACTTGATGGACATCAAGTGAAAAAAATTGCTGTACA
TAAATTAGATATACAAAAGGAGTTATAA

Upstream 100 bases:

>100_bases
TTTTTCTTTGACTATTCTTTTCATTTGGATTTATTATAAAAGTATAACATAATTGCAGGAGGTGACATCTTTATTCCAAA
CGACGGAATAGAGAATACAC

Downstream 100 bases:

>100_bases
AGTGACTGTTTTCTTAACAATCTGTATCATTGCCTGTTTCATTATTTCATTTCTAGCTTTTATTTATCCTATTATCCCGG
GCATCCTAGCTGTCTGGGCT

Product: CBS domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 435; Mature: 435

Protein sequence:

>435_residues
MDILNIFLIFVLILISGFFVASEFAVVKVRKSRIDQLANEGNKQALAARSVISNLDVYLSACQLGITITSLGLGWLGEPT
VEHLLRPLFEKINITGTMANTLSFIIAFSVITFFHVVLGELVPKSFAIQKAEAITLKFARPLILFDKIMYPFIWLLNSTA
IFFTKLLGLEPAKENELAHSEEELRLILGESFKSGEINQTEYKYVNNIFEFDDRVAKEIMVPRTEMICLSTENTLEENMD
IVATEKYTRYPIIEKDKDDIIGMINTKEVFHDQTKGIHKPLESYIHPVLTVFETVPIRKTLVHLQKNRVQMGIVMDEYGG
TAGLLTMEDILEEIIGEIQDEFDADESPMIEKRTPKLTVLDGKVLISEVNDMFGLHIDESDLDTIGGWLLSQAVDVNIEA
GYSIEYAGFQFKALELDGHQVKKIAVHKLDIQKEL

Sequences:

>Translated_435_residues
MDILNIFLIFVLILISGFFVASEFAVVKVRKSRIDQLANEGNKQALAARSVISNLDVYLSACQLGITITSLGLGWLGEPT
VEHLLRPLFEKINITGTMANTLSFIIAFSVITFFHVVLGELVPKSFAIQKAEAITLKFARPLILFDKIMYPFIWLLNSTA
IFFTKLLGLEPAKENELAHSEEELRLILGESFKSGEINQTEYKYVNNIFEFDDRVAKEIMVPRTEMICLSTENTLEENMD
IVATEKYTRYPIIEKDKDDIIGMINTKEVFHDQTKGIHKPLESYIHPVLTVFETVPIRKTLVHLQKNRVQMGIVMDEYGG
TAGLLTMEDILEEIIGEIQDEFDADESPMIEKRTPKLTVLDGKVLISEVNDMFGLHIDESDLDTIGGWLLSQAVDVNIEA
GYSIEYAGFQFKALELDGHQVKKIAVHKLDIQKEL
>Mature_435_residues
MDILNIFLIFVLILISGFFVASEFAVVKVRKSRIDQLANEGNKQALAARSVISNLDVYLSACQLGITITSLGLGWLGEPT
VEHLLRPLFEKINITGTMANTLSFIIAFSVITFFHVVLGELVPKSFAIQKAEAITLKFARPLILFDKIMYPFIWLLNSTA
IFFTKLLGLEPAKENELAHSEEELRLILGESFKSGEINQTEYKYVNNIFEFDDRVAKEIMVPRTEMICLSTENTLEENMD
IVATEKYTRYPIIEKDKDDIIGMINTKEVFHDQTKGIHKPLESYIHPVLTVFETVPIRKTLVHLQKNRVQMGIVMDEYGG
TAGLLTMEDILEEIIGEIQDEFDADESPMIEKRTPKLTVLDGKVLISEVNDMFGLHIDESDLDTIGGWLLSQAVDVNIEA
GYSIEYAGFQFKALELDGHQVKKIAVHKLDIQKEL

Specific function: Unknown

COG id: COG1253

COG function: function code R; Hemolysins and related proteins containing CBS domains

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=394, Percent_Identity=48.9847715736041, Blast_Score=391, Evalue=1e-109,
Organism=Escherichia coli, GI1790664, Length=434, Percent_Identity=22.3502304147465, Blast_Score=149, Evalue=3e-37,
Organism=Escherichia coli, GI145693175, Length=418, Percent_Identity=24.1626794258373, Blast_Score=139, Evalue=5e-34,
Organism=Escherichia coli, GI1786879, Length=270, Percent_Identity=29.2592592592593, Blast_Score=113, Evalue=3e-26,
Organism=Escherichia coli, GI87082033, Length=232, Percent_Identity=21.9827586206897, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1788119, Length=242, Percent_Identity=24.7933884297521, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR002550
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 49167; Mature: 49167

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDILNIFLIFVLILISGFFVASEFAVVKVRKSRIDQLANEGNKQALAARSVISNLDVYLS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
ACQLGITITSLGLGWLGEPTVEHLLRPLFEKINITGTMANTLSFIIAFSVITFFHVVLGE
HHHHCEEHECCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LVPKSFAIQKAEAITLKFARPLILFDKIMYPFIWLLNSTAIFFTKLLGLEPAKENELAHS
HCCHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCC
EEELRLILGESFKSGEINQTEYKYVNNIFEFDDRVAKEIMVPRTEMICLSTENTLEENMD
HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCC
IVATEKYTRYPIIEKDKDDIIGMINTKEVFHDQTKGIHKPLESYIHPVLTVFETVPIRKT
EEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
LVHLQKNRVQMGIVMDEYGGTAGLLTMEDILEEIIGEIQDEFDADESPMIEKRTPKLTVL
HHHHHHCCEEEEEEEECCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEE
DGKVLISEVNDMFGLHIDESDLDTIGGWLLSQAVDVNIEAGYSIEYAGFQFKALELDGHQ
CCHHHHHHHHHHHCCEECCCCHHHHHHHHHHHHHEEEEECCCEEEECCEEEEEEECCCHH
VKKIAVHKLDIQKEL
HHHHHHHHHHHCCCC
>Mature Secondary Structure
MDILNIFLIFVLILISGFFVASEFAVVKVRKSRIDQLANEGNKQALAARSVISNLDVYLS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
ACQLGITITSLGLGWLGEPTVEHLLRPLFEKINITGTMANTLSFIIAFSVITFFHVVLGE
HHHHCEEHECCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LVPKSFAIQKAEAITLKFARPLILFDKIMYPFIWLLNSTAIFFTKLLGLEPAKENELAHS
HCCHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCC
EEELRLILGESFKSGEINQTEYKYVNNIFEFDDRVAKEIMVPRTEMICLSTENTLEENMD
HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCC
IVATEKYTRYPIIEKDKDDIIGMINTKEVFHDQTKGIHKPLESYIHPVLTVFETVPIRKT
EEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
LVHLQKNRVQMGIVMDEYGGTAGLLTMEDILEEIIGEIQDEFDADESPMIEKRTPKLTVL
HHHHHHCCEEEEEEEECCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEE
DGKVLISEVNDMFGLHIDESDLDTIGGWLLSQAVDVNIEAGYSIEYAGFQFKALELDGHQ
CCHHHHHHHHHHHCCEECCCCHHHHHHHHHHHHHEEEEECCCEEEECCEEEEEEECCCHH
VKKIAVHKLDIQKEL
HHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]