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The map label for this gene is ygiD [H]

Identifier: 30261899

GI number: 30261899

Start: 1742646

End: 1743407

Strand: Reverse

Name: ygiD [H]

Synonym: BA_1859

Alternate gene names: 30261899

Gene position: 1743407-1742646 (Counterclockwise)

Preceding gene: 30261906

Following gene: 30261895

Centisome position: 33.35

GC content: 35.43

Gene sequence:

>762_bases
ATGATGCCATCATTATTTTTAGCACACGGATCACCGATGCTCGCTATTCAAGATACAGATTATACAAGTTTTTTAAAAAC
ACTTGGAGAAACATATAAACCGAAAGCAATTGTTATTTTCACTGCTCACTGGGAAAGTGAAGTATTAACGATTTCCTCAA
CAGATAACGAATATGAAACAATTTATGATTTTGGAGGTTTTCCTCCAGAGTTATATGAAATTAAGTATCGTGCAAAAGGT
TCTTCTAGCATTGCATCTATGTTAGAAACAAAGTTTAAAAACAAAGGTATTCCAGTCCATCATAATATGACGAGAGGTTT
AGATCATGGCTCATGGACACTCTTGCATCGCATGTATCCAGAAGCAAATATTCCTGTCGTCCAAATATCAGTAAATCCAT
TCCTTTCTGCAAAAGAACAATTTAAGATTGGAGAAGCATTAAAAGGACTTGGACAGGAAGATATTTTAGTAATTGGTAGT
GGTGTTACCGTTCATAACTTACGAGCACTGAAATGGAATCAAACTACACCCGAACAATGGGCAATTGAATTTGATGATTG
GATTATTAAACATATGCAGGCTGCTGATAAAGATGCTTTATTTAATTGGGAGAAAAATGCTCCTCATGCACAATTAGCAG
TACCAAGAGCAGAGCATTTTGTACCTTTATTTATCGCTATGGGAAGTGGTGAAAATAACGGTGAAGTCATTCATCGCAGT
TACGAGCTTGGTACATTAAGTTATCTTTGTCTCCAATTTTAA

Upstream 100 bases:

>100_bases
CTTTTCTTATTAGATGTCAAACTATTTTATTGACGAACAGAAAATTAAATTATATAGTTACTTACATAAAGTAACTATAT
AACTTTAGGAGGTTTCTACT

Downstream 100 bases:

>100_bases
AGAAAAGGATGAAGCAATCTTTGCTTCATCCTTTTTTCATTCACTTAGTTAACTAACTTCCAAATGTCGTTTCTCTGATA
CCTCTTCGTTCTTATTATGA

Product: oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MMPSLFLAHGSPMLAIQDTDYTSFLKTLGETYKPKAIVIFTAHWESEVLTISSTDNEYETIYDFGGFPPELYEIKYRAKG
SSSIASMLETKFKNKGIPVHHNMTRGLDHGSWTLLHRMYPEANIPVVQISVNPFLSAKEQFKIGEALKGLGQEDILVIGS
GVTVHNLRALKWNQTTPEQWAIEFDDWIIKHMQAADKDALFNWEKNAPHAQLAVPRAEHFVPLFIAMGSGENNGEVIHRS
YELGTLSYLCLQF

Sequences:

>Translated_253_residues
MMPSLFLAHGSPMLAIQDTDYTSFLKTLGETYKPKAIVIFTAHWESEVLTISSTDNEYETIYDFGGFPPELYEIKYRAKG
SSSIASMLETKFKNKGIPVHHNMTRGLDHGSWTLLHRMYPEANIPVVQISVNPFLSAKEQFKIGEALKGLGQEDILVIGS
GVTVHNLRALKWNQTTPEQWAIEFDDWIIKHMQAADKDALFNWEKNAPHAQLAVPRAEHFVPLFIAMGSGENNGEVIHRS
YELGTLSYLCLQF
>Mature_253_residues
MMPSLFLAHGSPMLAIQDTDYTSFLKTLGETYKPKAIVIFTAHWESEVLTISSTDNEYETIYDFGGFPPELYEIKYRAKG
SSSIASMLETKFKNKGIPVHHNMTRGLDHGSWTLLHRMYPEANIPVVQISVNPFLSAKEQFKIGEALKGLGQEDILVIGS
GVTVHNLRALKWNQTTPEQWAIEFDDWIIKHMQAADKDALFNWEKNAPHAQLAVPRAEHFVPLFIAMGSGENNGEVIHRS
YELGTLSYLCLQF

Specific function: Unknown

COG id: COG3384

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DODA-type extradiol aromatic ring- opening dioxygenase family [H]

Homologues:

Organism=Escherichia coli, GI226510974, Length=260, Percent_Identity=36.1538461538462, Blast_Score=159, Evalue=2e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014436
- InterPro:   IPR004183 [H]

Pfam domain/function: PF02900 LigB [H]

EC number: NA

Molecular weight: Translated: 28573; Mature: 28573

Theoretical pI: Translated: 6.12; Mature: 6.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMPSLFLAHGSPMLAIQDTDYTSFLKTLGETYKPKAIVIFTAHWESEVLTISSTDNEYET
CCCCEEEECCCEEEEEECCCHHHHHHHHHHCCCCCEEEEEEEECCCEEEEEECCCCCCEE
IYDFGGFPPELYEIKYRAKGSSSIASMLETKFKNKGIPVHHNMTRGLDHGSWTLLHRMYP
EEECCCCCHHHEEEEEECCCCHHHHHHHHHHHHCCCCCEECCHHCCCCCCCEEEEEECCC
EANIPVVQISVNPFLSAKEQFKIGEALKGLGQEDILVIGSGVTVHNLRALKWNQTTPEQW
CCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCEEEEEEEEEECCCCCHHE
AIEFDDWIIKHMQAADKDALFNWEKNAPHAQLAVPRAEHFVPLFIAMGSGENNGEVIHRS
EEEHHHHHHHHHHHCCCCCEECCCCCCCCCEEECCCCCCCEEEEEEECCCCCCCCEEEEE
YELGTLSYLCLQF
ECCCHHHHHEECC
>Mature Secondary Structure
MMPSLFLAHGSPMLAIQDTDYTSFLKTLGETYKPKAIVIFTAHWESEVLTISSTDNEYET
CCCCEEEECCCEEEEEECCCHHHHHHHHHHCCCCCEEEEEEEECCCEEEEEECCCCCCEE
IYDFGGFPPELYEIKYRAKGSSSIASMLETKFKNKGIPVHHNMTRGLDHGSWTLLHRMYP
EEECCCCCHHHEEEEEECCCCHHHHHHHHHHHHCCCCCEECCHHCCCCCCCEEEEEECCC
EANIPVVQISVNPFLSAKEQFKIGEALKGLGQEDILVIGSGVTVHNLRALKWNQTTPEQW
CCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCEEEEEEEEEECCCCCHHE
AIEFDDWIIKHMQAADKDALFNWEKNAPHAQLAVPRAEHFVPLFIAMGSGENNGEVIHRS
EEEHHHHHHHHHHHCCCCCEECCCCCCCCCEEECCCCCCCEEEEEEECCCCCCCCEEEEE
YELGTLSYLCLQF
ECCCHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1314093; 9278503 [H]