| Definition | Shigella flexneri 2a str. 2457T, complete genome. |
|---|---|
| Accession | NC_004741 |
| Length | 4,599,354 |
Click here to switch to the map view.
The map label for this gene is amiB
Identifier: 30065541
GI number: 30065541
Start: 4493043
End: 4494380
Strand: Direct
Name: amiB
Synonym: S4592
Alternate gene names: 30065541
Gene position: 4493043-4494380 (Clockwise)
Preceding gene: 30065540
Following gene: 30065542
Centisome position: 97.69
GC content: 54.86
Gene sequence:
>1338_bases ATGATGTATCGCATCAGAAATTGGTTGGTAGCGACGCTGCTGCTGCTGTGCACGCCGGTGGGTGCCGCGACGCTCTCTGA TATTCAGGTTTCTAACGGTAATCAACAGGCGCGGATAACGTTGAGTTTTATTGGCGATCCTGATTATGCGTTTAGCCATC AAAGCAAACGCACCGTGGCGCTCGATATCAAACAAACGGGCATGATTCAGGGACTGCCGTTGTTGTTCAGCGGCAATAAT CTGGTGAAGGCGATTCGCTCTGGAACGCCTAAAGATGCACAAACGCTACGGCTGGTGGTCGATCTTACCGAAAACGGTAA AACCGAAGCGGTGAAGCGGCAGAATGGCAGCAATTACACTGTCGTCTTTACGATTAACGCCGATGTGCCGCCACCGCCTC CTCCGCCGCCCGTGGTTGCGAAACGCGTTGAAACGCCTGCGGTTGTCGCACCGCGCGTCAGCGAACCGGCGCGCAATCCG TTTAAAACGGAAAGTAACCGCACTACGGGTGTTATCAGCAGTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAA CACTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGCCCCGGTGGTACGC GGGAGAAAAATGTCACCATCGCCATCGCGCGTAAATTGCGTACTTTGCTCAATGACGATCCGATGTTTAAAGGCGTTTTA ACCCGTGACGGGGATTACTTTATCTCGGTGATGGGGCGCAGTGATGTGGCACATAAGCAAAACGCCAATTTCCTCGTGTC GATTCACGCTGATGCCGCACCGAACCGTAGTGCGACTGGCGCTTCCGTATGGGTGCTCTCTAACCGTCGCGCCAACAGTG AAATGGCCAGCTGGCTGGAGCAGCACGAGAAACTGTCGGAGCTGCTGGGTGGGGCGGGTGATGTGCTGGCGAACAGTCAG TCTGACCCCTATTTAAGCCAGGCGGTGCTGGATTTACAGTTCGGTCATTCCCAGCGGGTAGGGTATGATGTAGCGACCAG TATGATCAGTCAGTTGCAACGCATTGGCGAAATACATAAACGTCGACCAGAACACGCCAGCCTTGGCGTTCTGCGCTCGC CGGATATCCCATCAGTACTGGTCGAAACCGGTTTTATCAGCAACAACAGCGAAGAACGTTTGCTGGCGAGCGACGATTAC CAACAACAGCTGGCAGAAGCCATTTACAAAGGCCTGCGCAATTACTTCCTTGCGCATCCGATGCAATCTGCGCCGCAGGG TGCAACGGCACAAACTGCCAGTACGGTGACGACGCCAGATCGCACGCTGCCAAACTAA
Upstream 100 bases:
>100_bases TTATCAGGCACAAGGCCGTGAGGCGCGCGTGAGTGCGGTTTCCTCTGCGGGTGAATTGTTGCTGGCGCGTTTAGCCGGTT AACCTTTGAAAGGTGGCGGG
Downstream 100 bases:
>100_bases GGACGATTGATGCCAATTCAGGTCTTACCGCCACAACTGGCGAACCAGATTGCCGCAGGTGAGGTGGTCGAGCGACCTGC GTCGGTAGTCAAAGAACTAG
Product: N-acetylmuramoyl-l-alanine amidase II
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 445; Mature: 445
Protein sequence:
>445_residues MMYRIRNWLVATLLLLCTPVGAATLSDIQVSNGNQQARITLSFIGDPDYAFSHQSKRTVALDIKQTGMIQGLPLLFSGNN LVKAIRSGTPKDAQTLRLVVDLTENGKTEAVKRQNGSNYTVVFTINADVPPPPPPPPVVAKRVETPAVVAPRVSEPARNP FKTESNRTTGVISSNTVTRPAARATANTGDKIIIAIDAGHGGQDPGAIGPGGTREKNVTIAIARKLRTLLNDDPMFKGVL TRDGDYFISVMGRSDVAHKQNANFLVSIHADAAPNRSATGASVWVLSNRRANSEMASWLEQHEKLSELLGGAGDVLANSQ SDPYLSQAVLDLQFGHSQRVGYDVATSMISQLQRIGEIHKRRPEHASLGVLRSPDIPSVLVETGFISNNSEERLLASDDY QQQLAEAIYKGLRNYFLAHPMQSAPQGATAQTASTVTTPDRTLPN
Sequences:
>Translated_445_residues MMYRIRNWLVATLLLLCTPVGAATLSDIQVSNGNQQARITLSFIGDPDYAFSHQSKRTVALDIKQTGMIQGLPLLFSGNN LVKAIRSGTPKDAQTLRLVVDLTENGKTEAVKRQNGSNYTVVFTINADVPPPPPPPPVVAKRVETPAVVAPRVSEPARNP FKTESNRTTGVISSNTVTRPAARATANTGDKIIIAIDAGHGGQDPGAIGPGGTREKNVTIAIARKLRTLLNDDPMFKGVL TRDGDYFISVMGRSDVAHKQNANFLVSIHADAAPNRSATGASVWVLSNRRANSEMASWLEQHEKLSELLGGAGDVLANSQ SDPYLSQAVLDLQFGHSQRVGYDVATSMISQLQRIGEIHKRRPEHASLGVLRSPDIPSVLVETGFISNNSEERLLASDDY QQQLAEAIYKGLRNYFLAHPMQSAPQGATAQTASTVTTPDRTLPN >Mature_445_residues MMYRIRNWLVATLLLLCTPVGAATLSDIQVSNGNQQARITLSFIGDPDYAFSHQSKRTVALDIKQTGMIQGLPLLFSGNN LVKAIRSGTPKDAQTLRLVVDLTENGKTEAVKRQNGSNYTVVFTINADVPPPPPPPPVVAKRVETPAVVAPRVSEPARNP FKTESNRTTGVISSNTVTRPAARATANTGDKIIIAIDAGHGGQDPGAIGPGGTREKNVTIAIARKLRTLLNDDPMFKGVL TRDGDYFISVMGRSDVAHKQNANFLVSIHADAAPNRSATGASVWVLSNRRANSEMASWLEQHEKLSELLGGAGDVLANSQ SDPYLSQAVLDLQFGHSQRVGYDVATSMISQLQRIGEIHKRRPEHASLGVLRSPDIPSVLVETGFISNNSEERLLASDDY QQQLAEAIYKGLRNYFLAHPMQSAPQGATAQTASTVTTPDRTLPN
Specific function: Cell-wall hydrolase involved in septum cleavage during cell division. Can also act as powerful autolysin in the presence of murein synthesis inhibitors [H]
COG id: COG0860
COG function: function code M; N-acetylmuramoyl-L-alanine amidase
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N-acetylmuramoyl-L-alanine amidase 3 family [H]
Homologues:
Organism=Escherichia coli, GI1790611, Length=445, Percent_Identity=99.3258426966292, Blast_Score=903, Evalue=0.0, Organism=Escherichia coli, GI87082163, Length=225, Percent_Identity=40.4444444444444, Blast_Score=177, Evalue=1e-45, Organism=Escherichia coli, GI1788776, Length=244, Percent_Identity=38.5245901639344, Blast_Score=174, Evalue=1e-44,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002508 [H]
Pfam domain/function: PF01520 Amidase_3 [H]
EC number: =3.5.1.28 [H]
Molecular weight: Translated: 47984; Mature: 47984
Theoretical pI: Translated: 9.60; Mature: 9.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMYRIRNWLVATLLLLCTPVGAATLSDIQVSNGNQQARITLSFIGDPDYAFSHQSKRTVA CCCHHHHHHHHHHHHHHCCCCCCEECEEEECCCCCEEEEEEEEECCCCCCCCCCCCCEEE LDIKQTGMIQGLPLLFSGNNLVKAIRSGTPKDAQTLRLVVDLTENGKTEAVKRQNGSNYT EEEHHCCCCCCCEEEEECCHHHHHHHCCCCCCCEEEEEEEEECCCCCCHHHHHCCCCCEE VVFTINADVPPPPPPPPVVAKRVETPAVVAPRVSEPARNPFKTESNRTTGVISSNTVTRP EEEEEECCCCCCCCCCCHHHHCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCC AARATANTGDKIIIAIDAGHGGQDPGAIGPGGTREKNVTIAIARKLRTLLNDDPMFKGVL HHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHCCCCCEEEEE TRDGDYFISVMGRSDVAHKQNANFLVSIHADAAPNRSATGASVWVLSNRRANSEMASWLE ECCCCEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCHHHHHHHH QHEKLSELLGGAGDVLANSQSDPYLSQAVLDLQFGHSQRVGYDVATSMISQLQRIGEIHK HHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH RRPEHASLGVLRSPDIPSVLVETGFISNNSEERLLASDDYQQQLAEAIYKGLRNYFLAHP CCCCCCCCCEEECCCCCCHHHEECCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHCC MQSAPQGATAQTASTVTTPDRTLPN CCCCCCCCCCCCCCEECCCCCCCCC >Mature Secondary Structure MMYRIRNWLVATLLLLCTPVGAATLSDIQVSNGNQQARITLSFIGDPDYAFSHQSKRTVA CCCHHHHHHHHHHHHHHCCCCCCEECEEEECCCCCEEEEEEEEECCCCCCCCCCCCCEEE LDIKQTGMIQGLPLLFSGNNLVKAIRSGTPKDAQTLRLVVDLTENGKTEAVKRQNGSNYT EEEHHCCCCCCCEEEEECCHHHHHHHCCCCCCCEEEEEEEEECCCCCCHHHHHCCCCCEE VVFTINADVPPPPPPPPVVAKRVETPAVVAPRVSEPARNPFKTESNRTTGVISSNTVTRP EEEEEECCCCCCCCCCCHHHHCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCC AARATANTGDKIIIAIDAGHGGQDPGAIGPGGTREKNVTIAIARKLRTLLNDDPMFKGVL HHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHCCCCCEEEEE TRDGDYFISVMGRSDVAHKQNANFLVSIHADAAPNRSATGASVWVLSNRRANSEMASWLE ECCCCEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCHHHHHHHH QHEKLSELLGGAGDVLANSQSDPYLSQAVLDLQFGHSQRVGYDVATSMISQLQRIGEIHK HHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH RRPEHASLGVLRSPDIPSVLVETGFISNNSEERLLASDDYQQQLAEAIYKGLRNYFLAHP CCCCCCCCCEEECCCCCCHHHEECCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHCC MQSAPQGATAQTASTVTTPDRTLPN CCCCCCCCCCCCCCEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7511774; 7610040; 9278503; 1594459 [H]