Click here to switch to the map view.

The map label for this gene is ytfE

Identifier: 30065498

GI number: 30065498

Start: 4448189

End: 4448851

Strand: Direct

Name: ytfE

Synonym: S4542

Alternate gene names: 30065498

Gene position: 4448189-4448851 (Clockwise)

Preceding gene: 30065497

Following gene: 30065500

Centisome position: 96.71

GC content: 53.24

Gene sequence:

>663_bases
ATGGCTTATCGCGACCAACCTTTAGGTGAACTGGCGCTCTCTATCCCTCGCGCTTCGGCTCTGTTTCGTAAATATGATAT
GGATTACTGCTGTGGCGGTAAGCAGACGCTGGCGCGCGCGGCGGCACGTAAAGAACTGGATGTTGAGGTCATTGAAGCTG
AACTGGCAAAGCTTGCTGAACAACCGATTGAGAAAGACTGGCGTAGCGCCCCGCTGGCAGAAATCATTGACCATATCATC
GTGCGCTACCACGATCGTCACCGCGAGCAGCTGCCGGAGCTGATCCTGCAAGCGACTAAAGTCGAGCGCGTTCACGCCGA
CAAACCGAGCGTGCCAAAAGGGCTGACAAAATACCTGACCATGCTGCATGAAGAGCTTTCCAGCCACATGATGAAAGAAG
AGCAGATCCTCTTCCCGATGATCAAACAAGGCATGGGCAGCCAGGCAATGGGGCCAATCAGCGTAATGGAAAGCGAGCAC
GATGAAGCGGGCGAACTGCTGGAAGTGATCAAACACACTACCAATAACGTCACACCGCCGCCAGAAGCCTGCACCACCTG
GAAAGCGATGTATAACGGCATTAATGAACTGATTGATGACCTGATGGATCACATCAGTCTGGAAAACAATGTACTGTTCC
CACGCGCCCTAGCGGGTGAGTGA

Upstream 100 bases:

>100_bases
GCAGTGAGTTAAATAAGCCTCTGCTACGTAAGGGTTATAGCTTTTGCCTTAAAGGTGTATTTAAAATACATCTTATCTTA
TTAAGAATGAGGTATCAGCT

Downstream 100 bases:

>100_bases
TCTAAAAGCTGGATGGCATTGCGCCATCCAGCATGATAATGCGGTTATTTCCGCAGTTCAGCAGCCCGCTTCTTACCAAT
AAACAGCCAGCCCAACCCCA

Product: iron-sulfur cluster repair di-iron protein

Products: NA

Alternate protein names: RCMNS [H]

Number of amino acids: Translated: 220; Mature: 219

Protein sequence:

>220_residues
MAYRDQPLGELALSIPRASALFRKYDMDYCCGGKQTLARAAARKELDVEVIEAELAKLAEQPIEKDWRSAPLAEIIDHII
VRYHDRHREQLPELILQATKVERVHADKPSVPKGLTKYLTMLHEELSSHMMKEEQILFPMIKQGMGSQAMGPISVMESEH
DEAGELLEVIKHTTNNVTPPPEACTTWKAMYNGINELIDDLMDHISLENNVLFPRALAGE

Sequences:

>Translated_220_residues
MAYRDQPLGELALSIPRASALFRKYDMDYCCGGKQTLARAAARKELDVEVIEAELAKLAEQPIEKDWRSAPLAEIIDHII
VRYHDRHREQLPELILQATKVERVHADKPSVPKGLTKYLTMLHEELSSHMMKEEQILFPMIKQGMGSQAMGPISVMESEH
DEAGELLEVIKHTTNNVTPPPEACTTWKAMYNGINELIDDLMDHISLENNVLFPRALAGE
>Mature_219_residues
AYRDQPLGELALSIPRASALFRKYDMDYCCGGKQTLARAAARKELDVEVIEAELAKLAEQPIEKDWRSAPLAEIIDHIIV
RYHDRHREQLPELILQATKVERVHADKPSVPKGLTKYLTMLHEELSSHMMKEEQILFPMIKQGMGSQAMGPISVMESEHD
EAGELLEVIKHTTNNVTPPPEACTTWKAMYNGINELIDDLMDHISLENNVLFPRALAGE

Specific function: Involved in anaerobic NO protection [H]

COG id: COG2846

COG function: function code D; Regulator of cell morphogenesis and NO signaling

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790654, Length=220, Percent_Identity=100, Blast_Score=455, Evalue=1e-130,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007500
- InterPro:   IPR019903
- InterPro:   IPR012312 [H]

Pfam domain/function: PF01814 Hemerythrin; PF04405 ScdA_N [H]

EC number: NA

Molecular weight: Translated: 24883; Mature: 24752

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYRDQPLGELALSIPRASALFRKYDMDYCCGGKQTLARAAARKELDVEVIEAELAKLAE
CCCCCCCHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
QPIEKDWRSAPLAEIIDHIIVRYHDRHREQLPELILQATKVERVHADKPSVPKGLTKYLT
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
MLHEELSSHMMKEEQILFPMIKQGMGSQAMGPISVMESEHDEAGELLEVIKHTTNNVTPP
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHCCCCCC
PEACTTWKAMYNGINELIDDLMDHISLENNVLFPRALAGE
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCC
>Mature Secondary Structure 
AYRDQPLGELALSIPRASALFRKYDMDYCCGGKQTLARAAARKELDVEVIEAELAKLAE
CCCCCCHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
QPIEKDWRSAPLAEIIDHIIVRYHDRHREQLPELILQATKVERVHADKPSVPKGLTKYLT
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
MLHEELSSHMMKEEQILFPMIKQGMGSQAMGPISVMESEHDEAGELLEVIKHTTNNVTPP
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHCCCCCC
PEACTTWKAMYNGINELIDDLMDHISLENNVLFPRALAGE
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA