Definition | Shigella flexneri 2a str. 2457T, complete genome. |
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Accession | NC_004741 |
Length | 4,599,354 |
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The map label for this gene is yhjX
Identifier: 30065174
GI number: 30065174
Start: 4092147
End: 4093355
Strand: Direct
Name: yhjX
Synonym: S4188
Alternate gene names: 30065174
Gene position: 4092147-4093355 (Clockwise)
Preceding gene: 30065173
Following gene: 161486388
Centisome position: 88.97
GC content: 51.53
Gene sequence:
>1209_bases ATGACACCTTCAAATTATCAGCGTACCCGCTGGCTGACACTCATCGGTACTATCATTACCCAGTTTGCGCTGGGGTCGGT TTATACCCGGAGCCTGTTTAATGGCGCGCTTTCTGCCAAGCTGGATGCGCCGGTAAGCCAGGTCGCTTTCTCTTTCGGCT TGTTAAGTCTGGGGCTGGCAATTTCGTCTTCTGTTGCGGGCAAATTGCAGGAACGTTTTGGCGTTAAACGCGTCACCGTG GCTTCCGGCATTTTGCTGGGATTAGGCTTCTTCCTGACCGCGCATTCCAACAACCTGATGATGCTGTGGTTAAGCGCCGG TGTGCTGGTCGGTCTGGCGGATGGCGCGGGTTACCTGCTGACGCTCTCTAACTGCGTGAAGTGGTTCCCGGAGCGTAAAG GTCTGATCTCCGCGTTCGCTATCGGTTCTTATGGTCTGGGTAGCCTGGGTTTCAAATTTATCGACACGCAGCTGCTCGAA ACGGTGGGTCTGGAAAAAACCTTTGTGATTTGGGGAGCGATTGCGCTGGTGATGATTGTTTTCGGCGCAACGTTAATGAA AGACGCACCAAAACAGGAAGTGAAAACCAGCAATGGTGTGGTGGAGAAAGATTACACGCTGGCAGAGTCGATGCGTAAAC CGCAGTACTGGATGTTAGCGGTAATGTTCCTGACTGCCTGCATGAGCGGCCTGTACGTGATTGGGGTAGCGAAAGATATC GCCCAAAGTCTGGCACACCTTGATGTGGTTTCCGCAGCCAATGCAGTAACGGTTATTTCCATCGCTAACCTTTCAGGTCG TCTGGTGCTGGGCATTCTGTCTGACAAAATTGCCCGTATCCGTGTTATCACCATTGGTCAGGTGATTTCGCTGGTGGGTA TGGCGGCCCTGCTGTTTGCACCATTAAATGCAGTGACGTTCTTTGCAGCGATTGCCTGCGTGGCATTTAACTTTGGCGGC ACTATTACCGTCTTTCCATCACTGGTCAGTGAGTTCTTCGGCCTCAATAACCTGGCGAAAAACTACGGTGTGATTTACCT CGGTTTCGGTATCGGTAGCATTTTTGGTTCGATTATCGCCTCACTGTTTGGCGGTTTCTATGTGACCTTCTACGTGATTT TCGCCCTGCTGATTCTGTCATTGGCGCTTTCTACGACGATTCGTCAGCCAGAGCAGAAAATGTTGCGTGAGGCGCATGGC TCCCTTTAA
Upstream 100 bases:
>100_bases TTCTGATGGCATTTCATGCCGTTTTTCCCCAAGCATAAAATGCACTTCGTTATGGTTGTCGGCAGAGATTTTTCCTTTTT ATTACTGCAGGAATACTGCC
Downstream 100 bases:
>100_bases TGCTCAGCCGCGAGCTACTGGGCTTCAGCTTCCGTGTGCATCAAACGCATCAACGAAATGTATAAACAATGACTCGTAAA ATTTGGGCCAGTTAACTGGC
Product: putative resistance protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 402; Mature: 401
Protein sequence:
>402_residues MTPSNYQRTRWLTLIGTIITQFALGSVYTRSLFNGALSAKLDAPVSQVAFSFGLLSLGLAISSSVAGKLQERFGVKRVTV ASGILLGLGFFLTAHSNNLMMLWLSAGVLVGLADGAGYLLTLSNCVKWFPERKGLISAFAIGSYGLGSLGFKFIDTQLLE TVGLEKTFVIWGAIALVMIVFGATLMKDAPKQEVKTSNGVVEKDYTLAESMRKPQYWMLAVMFLTACMSGLYVIGVAKDI AQSLAHLDVVSAANAVTVISIANLSGRLVLGILSDKIARIRVITIGQVISLVGMAALLFAPLNAVTFFAAIACVAFNFGG TITVFPSLVSEFFGLNNLAKNYGVIYLGFGIGSIFGSIIASLFGGFYVTFYVIFALLILSLALSTTIRQPEQKMLREAHG SL
Sequences:
>Translated_402_residues MTPSNYQRTRWLTLIGTIITQFALGSVYTRSLFNGALSAKLDAPVSQVAFSFGLLSLGLAISSSVAGKLQERFGVKRVTV ASGILLGLGFFLTAHSNNLMMLWLSAGVLVGLADGAGYLLTLSNCVKWFPERKGLISAFAIGSYGLGSLGFKFIDTQLLE TVGLEKTFVIWGAIALVMIVFGATLMKDAPKQEVKTSNGVVEKDYTLAESMRKPQYWMLAVMFLTACMSGLYVIGVAKDI AQSLAHLDVVSAANAVTVISIANLSGRLVLGILSDKIARIRVITIGQVISLVGMAALLFAPLNAVTFFAAIACVAFNFGG TITVFPSLVSEFFGLNNLAKNYGVIYLGFGIGSIFGSIIASLFGGFYVTFYVIFALLILSLALSTTIRQPEQKMLREAHG SL >Mature_401_residues TPSNYQRTRWLTLIGTIITQFALGSVYTRSLFNGALSAKLDAPVSQVAFSFGLLSLGLAISSSVAGKLQERFGVKRVTVA SGILLGLGFFLTAHSNNLMMLWLSAGVLVGLADGAGYLLTLSNCVKWFPERKGLISAFAIGSYGLGSLGFKFIDTQLLET VGLEKTFVIWGAIALVMIVFGATLMKDAPKQEVKTSNGVVEKDYTLAESMRKPQYWMLAVMFLTACMSGLYVIGVAKDIA QSLAHLDVVSAANAVTVISIANLSGRLVLGILSDKIARIRVITIGQVISLVGMAALLFAPLNAVTFFAAIACVAFNFGGT ITVFPSLVSEFFGLNNLAKNYGVIYLGFGIGSIFGSIIASLFGGFYVTFYVIFALLILSLALSTTIRQPEQKMLREAHGS L
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1789969, Length=402, Percent_Identity=98.7562189054726, Blast_Score=785, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 - InterPro: IPR004741 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 42918; Mature: 42787
Theoretical pI: Translated: 9.91; Mature: 9.91
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPSNYQRTRWLTLIGTIITQFALGSVYTRSLFNGALSAKLDAPVSQVAFSFGLLSLGLA CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH ISSSVAGKLQERFGVKRVTVASGILLGLGFFLTAHSNNLMMLWLSAGVLVGLADGAGYLL HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHEEECCCCCHHH TLSNCVKWFPERKGLISAFAIGSYGLGSLGFKFIDTQLLETVGLEKTFVIWGAIALVMIV HHHHHHHHCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH FGATLMKDAPKQEVKTSNGVVEKDYTLAESMRKPQYWMLAVMFLTACMSGLYVIGVAKDI HHHHHHCCCCHHHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHEEEHHHHHH AQSLAHLDVVSAANAVTVISIANLSGRLVLGILSDKIARIRVITIGQVISLVGMAALLFA HHHHHHHHHHHHCCCEEEEEEECCCCCEEEEEHHCCHHHEEEEHHHHHHHHHHHHHHHHH PLNAVTFFAAIACVAFNFGGTITVFPSLVSEFFGLNNLAKNYGVIYLGFGIGSIFGSIIA HHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHH SLFGGFYVTFYVIFALLILSLALSTTIRQPEQKMLREAHGSL HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC >Mature Secondary Structure TPSNYQRTRWLTLIGTIITQFALGSVYTRSLFNGALSAKLDAPVSQVAFSFGLLSLGLA CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH ISSSVAGKLQERFGVKRVTVASGILLGLGFFLTAHSNNLMMLWLSAGVLVGLADGAGYLL HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHEEECCCCCHHH TLSNCVKWFPERKGLISAFAIGSYGLGSLGFKFIDTQLLETVGLEKTFVIWGAIALVMIV HHHHHHHHCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH FGATLMKDAPKQEVKTSNGVVEKDYTLAESMRKPQYWMLAVMFLTACMSGLYVIGVAKDI HHHHHHCCCCHHHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHEEEHHHHHH AQSLAHLDVVSAANAVTVISIANLSGRLVLGILSDKIARIRVITIGQVISLVGMAALLFA HHHHHHHHHHHHCCCEEEEEEECCCCCEEEEEHHCCHHHEEEEHHHHHHHHHHHHHHHHH PLNAVTFFAAIACVAFNFGGTITVFPSLVSEFFGLNNLAKNYGVIYLGFGIGSIFGSIIA HHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHH SLFGGFYVTFYVIFALLILSLALSTTIRQPEQKMLREAHGSL HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8041620; 9278503 [H]