Definition | Shigella flexneri 2a str. 2457T, complete genome. |
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Accession | NC_004741 |
Length | 4,599,354 |
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The map label for this gene is yhjA
Identifier: 30065161
GI number: 30065161
Start: 4079901
End: 4081298
Strand: Reverse
Name: yhjA
Synonym: S4174
Alternate gene names: 30065161
Gene position: 4081298-4079901 (Counterclockwise)
Preceding gene: 30065162
Following gene: 30065160
Centisome position: 88.74
GC content: 48.5
Gene sequence:
>1398_bases ATGAAAATGGTCTCACGTATTACCGCGATCGGCCTGGCTGGCGTCGCGATTTGCTATTTAGGGTTATCTGGTTATGTGTG GTACCACGATAATAAACGCAGTAAACAGGCCGATGTTCAGGCATCTGCTGTCAGTGAAAATAATAAGGTTTTAGGCTTTC TCCGCGAAAAAGGATGCGACTATTGCCACACGCCTTCGGCAGAATTACCCGCCTATTATTATATTCCTGGCGCGAAACAG TTGATGGATTACGACATTAAGCTTGGATATAAATCTTTTAACCTCGAGGCCGTGCGTGCGGCACTGCTGGCTGATAAACC CGTTTCGCAAAGCGATCTGAATAAGATTGAATGGGTGATGCAGTATGAAACTATGCCACCAACGCGTTATACCGCGCTAC ACTGGGCGGGTAAGGTGAGTGATGAAGAGCGGGCGGAAATACTGGCCTGGATTGCAAAACAGCGCGCGGAATATTACGCC AGCAATGATACTGCTCCGGAGCATCGCAATGAACCGGTGCAGCCCATCCCGCAAAAACTGCCTACCGATGCGCAAAAAGT GGCGTTGGGCTTTGCGCTGTATCACGATCCCCGTTTATCGGCTGATAGCACCATTTCATGCGCTCATTGCCATACGTTGA ATGCGGGGGGCGTCGATGGCAGAAAAACATCGATTGGTGTTGGTGGCGCAGTTGGGCCGATTAATGCGCCGACGGTATTT AACTCAGTATTTAACGTTGAGCAGTTCTGGGATGGTCGTGCGGCAACATTGCAGGATCAGGCAGGTGGACCGCCGTTGAA CCCGATTGAAATGGCGTCGAAATCCTGGGACGAAATTATTGCTAAGCTGGAAAAAGATCCGCAGCTTAAAGCGCAGTTCC TCGAAGTTTATCCGCAAGGTTTCAGTGGCGAAAATATTACTGATGCCATTGCTGAATTTGAGAAAACATTAATTACGCCG GATTCCCCATTTGATAAATGGTTGCGTGGAGATGAAAATGCGCTGACGGCGCAACAGAAAAAAGGCTATCAATTATTTAA AGATAATAAATGTGCAACTTGTCATGGTGGTATTATTCTCGGCGGACGTTCCTTTGAACCGTTGGGGCTGAAAAAAGACT TTAACTTTGGGGAAATTACGGCGGCGGATATTGGTCGTATGAATGTGACTAAAGAAGAGCGTGATAAATTGCGTCAGAAA GTACCCGGTTTACGTAACGTTGCTTTAACGGCACCGTACTTCCATCGCGGTGACGTGCCGACGCTGGACGGGGCGGTGAA ACTGATGCTGCGCTATCAGGTAGGCAAAGAGCTGCCGCAGGAGGATGTGGATGATATCGTAGCTTTCCTGCACAGTCTGA ACGGGGTGTACACGCCGTATATGCAGGATAAACAATAA
Upstream 100 bases:
>100_bases AAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCAATTTTCTGGGTCACAATAACTC ACCACCGTGAGGGAAGAATA
Downstream 100 bases:
>100_bases TTAATTTGATCGCCCGAACAGGAATGTTTGGGCGATTTTTATTACGATAATAAAGTCTGTTTTTAATATTATCATGTTAA ATGTTTATATTATAAAAAGT
Product: putative cytochrome C peroxidase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 465; Mature: 465
Protein sequence:
>465_residues MKMVSRITAIGLAGVAICYLGLSGYVWYHDNKRSKQADVQASAVSENNKVLGFLREKGCDYCHTPSAELPAYYYIPGAKQ LMDYDIKLGYKSFNLEAVRAALLADKPVSQSDLNKIEWVMQYETMPPTRYTALHWAGKVSDEERAEILAWIAKQRAEYYA SNDTAPEHRNEPVQPIPQKLPTDAQKVALGFALYHDPRLSADSTISCAHCHTLNAGGVDGRKTSIGVGGAVGPINAPTVF NSVFNVEQFWDGRAATLQDQAGGPPLNPIEMASKSWDEIIAKLEKDPQLKAQFLEVYPQGFSGENITDAIAEFEKTLITP DSPFDKWLRGDENALTAQQKKGYQLFKDNKCATCHGGIILGGRSFEPLGLKKDFNFGEITAADIGRMNVTKEERDKLRQK VPGLRNVALTAPYFHRGDVPTLDGAVKLMLRYQVGKELPQEDVDDIVAFLHSLNGVYTPYMQDKQ
Sequences:
>Translated_465_residues MKMVSRITAIGLAGVAICYLGLSGYVWYHDNKRSKQADVQASAVSENNKVLGFLREKGCDYCHTPSAELPAYYYIPGAKQ LMDYDIKLGYKSFNLEAVRAALLADKPVSQSDLNKIEWVMQYETMPPTRYTALHWAGKVSDEERAEILAWIAKQRAEYYA SNDTAPEHRNEPVQPIPQKLPTDAQKVALGFALYHDPRLSADSTISCAHCHTLNAGGVDGRKTSIGVGGAVGPINAPTVF NSVFNVEQFWDGRAATLQDQAGGPPLNPIEMASKSWDEIIAKLEKDPQLKAQFLEVYPQGFSGENITDAIAEFEKTLITP DSPFDKWLRGDENALTAQQKKGYQLFKDNKCATCHGGIILGGRSFEPLGLKKDFNFGEITAADIGRMNVTKEERDKLRQK VPGLRNVALTAPYFHRGDVPTLDGAVKLMLRYQVGKELPQEDVDDIVAFLHSLNGVYTPYMQDKQ >Mature_465_residues MKMVSRITAIGLAGVAICYLGLSGYVWYHDNKRSKQADVQASAVSENNKVLGFLREKGCDYCHTPSAELPAYYYIPGAKQ LMDYDIKLGYKSFNLEAVRAALLADKPVSQSDLNKIEWVMQYETMPPTRYTALHWAGKVSDEERAEILAWIAKQRAEYYA SNDTAPEHRNEPVQPIPQKLPTDAQKVALGFALYHDPRLSADSTISCAHCHTLNAGGVDGRKTSIGVGGAVGPINAPTVF NSVFNVEQFWDGRAATLQDQAGGPPLNPIEMASKSWDEIIAKLEKDPQLKAQFLEVYPQGFSGENITDAIAEFEKTLITP DSPFDKWLRGDENALTAQQKKGYQLFKDNKCATCHGGIILGGRSFEPLGLKKDFNFGEITAADIGRMNVTKEERDKLRQK VPGLRNVALTAPYFHRGDVPTLDGAVKLMLRYQVGKELPQEDVDDIVAFLHSLNGVYTPYMQDKQ
Specific function: Unknown
COG id: COG1858
COG function: function code P; Cytochrome c peroxidase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1789935, Length=465, Percent_Identity=99.5698924731183, Blast_Score=967, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009056 - InterPro: IPR003088 - InterPro: IPR004852 [H]
Pfam domain/function: PF03150 CCP_MauG; PF00034 Cytochrom_C [H]
EC number: =1.11.1.5 [H]
Molecular weight: Translated: 51571; Mature: 51571
Theoretical pI: Translated: 6.36; Mature: 6.36
Prosite motif: PS51007 CYTC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKMVSRITAIGLAGVAICYLGLSGYVWYHDNKRSKQADVQASAVSENNKVLGFLREKGCD CCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHCCCCCEEEEHHHCCCC YCHTPSAELPAYYYIPGAKQLMDYDIKLGYKSFNLEAVRAALLADKPVSQSDLNKIEWVM CCCCCCCCCCEEEECCCHHHHHHHHEEECCCCCCHHHHHHHHHHCCCCCHHHHHHHEEEE QYETMPPTRYTALHWAGKVSDEERAEILAWIAKQRAEYYASNDTAPEHRNEPVQPIPQKL EECCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHC PTDAQKVALGFALYHDPRLSADSTISCAHCHTLNAGGVDGRKTSIGVGGAVGPINAPTVF CCCHHHHHHHHHEEECCCCCCCCCEEEEEEEECCCCCCCCCCCEECCCCCCCCCCCCHHH NSVFNVEQFWDGRAATLQDQAGGPPLNPIEMASKSWDEIIAKLEKDPQLKAQFLEVYPQG HHHHHHHHHCCCCCCEECCCCCCCCCCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHCCCC FSGENITDAIAEFEKTLITPDSPFDKWLRGDENALTAQQKKGYQLFKDNKCATCHGGIIL CCCCCHHHHHHHHHHHCCCCCCCHHHHHCCCCCHHHHHHHCCCEEECCCCCEEECCCEEE GGRSFEPLGLKKDFNFGEITAADIGRMNVTKEERDKLRQKVPGLRNVALTAPYFHRGDVP CCCCCCCCCCCCCCCCCCEEHHHCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCC TLDGAVKLMLRYQVGKELPQEDVDDIVAFLHSLNGVYTPYMQDKQ CHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure MKMVSRITAIGLAGVAICYLGLSGYVWYHDNKRSKQADVQASAVSENNKVLGFLREKGCD CCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHCCCCCEEEEHHHCCCC YCHTPSAELPAYYYIPGAKQLMDYDIKLGYKSFNLEAVRAALLADKPVSQSDLNKIEWVM CCCCCCCCCCEEEECCCHHHHHHHHEEECCCCCCHHHHHHHHHHCCCCCHHHHHHHEEEE QYETMPPTRYTALHWAGKVSDEERAEILAWIAKQRAEYYASNDTAPEHRNEPVQPIPQKL EECCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHC PTDAQKVALGFALYHDPRLSADSTISCAHCHTLNAGGVDGRKTSIGVGGAVGPINAPTVF CCCHHHHHHHHHEEECCCCCCCCCEEEEEEEECCCCCCCCCCCEECCCCCCCCCCCCHHH NSVFNVEQFWDGRAATLQDQAGGPPLNPIEMASKSWDEIIAKLEKDPQLKAQFLEVYPQG HHHHHHHHHCCCCCCEECCCCCCCCCCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHCCCC FSGENITDAIAEFEKTLITPDSPFDKWLRGDENALTAQQKKGYQLFKDNKCATCHGGIIL CCCCCHHHHHHHHHHHCCCCCCCHHHHHCCCCCHHHHHHHCCCEEECCCCCEEECCCEEE GGRSFEPLGLKKDFNFGEITAADIGRMNVTKEERDKLRQKVPGLRNVALTAPYFHRGDVP CCCCCCCCCCCCCCCCCCEEHHHCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCC TLDGAVKLMLRYQVGKELPQEDVDDIVAFLHSLNGVYTPYMQDKQ CHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8041620; 9278503 [H]