Click here to switch to the map view.

The map label for this gene is kdgT

Identifier: 30064798

GI number: 30064798

Start: 3656898

End: 3657881

Strand: Reverse

Name: kdgT

Synonym: S3762

Alternate gene names: 30064798

Gene position: 3657881-3656898 (Counterclockwise)

Preceding gene: 30064799

Following gene: 30064795

Centisome position: 79.53

GC content: 52.74

Gene sequence:

>984_bases
ATGCAGATAAAACGCTCGATTGAGAAAATCCCGGGGGGGATGATGCTCGTCCCGCTATTCCTTGGCGCACTGTGCCACAC
CTTCTCGCCGGGGGCGGGGAAATATTTTGGATCATTCACCAACGGGATGATTACCGGTACGGTGCCCATTCTGGCGGTGT
GGTTTTTTTGCATGGGGGCGTCAATAAAATTAAGCGCGACGGGAACGGTACTGCGTAAATCCGGTACGCTGGTGGTAACT
AAAATTGCCGTCGCGTGGGTGGTTGCGGCAATTGCCTCGCGCATTATTCCGGAACATGGTGTTGAAGTTGGATTCTTTGC
CGGACTTTCAACGCTGGCGCTGGTGGCGGCGATGGATATGACCAACGGCGGACTTTACGCTTCCATCATGCAGCAGTACG
GTACGAAAGAAGAAGCTGGGGCATTTGTGTTGATGTCGTTGGAGTCCGGGCCGCTCATGACGATGATTATTCTGGGCACT
GCCGGGATTGCCTCGTTTGAACCGCATGTTTTCGTCGGCGCAGTATTACCGTTCCTGGTGGGCTTTGCCCTGGGGAATCT
TGACCCTGAATTACGAGAATTTTTCAGCAAAGCGGTGCAAACGCTGATTCCATTCTTTGCCTTCGCGCTGGGCAATACCA
TTGATTTGACTGTGATTGCCCAGACTGGTTTGCTGGGGATCCTGTTGGGTGTGGCAGTAATTATCGTGACCGGTATTCCG
TTGATTATCGCCGATAAATTGATTGGCGGTGGCGATGGCACTGCCGGAATTGCCGCTTCCAGTTCCGCAGGGGCCGCGGT
AGCGACACCTGTGCTGATTGCAGAAATGGTGCCTGCGTTTAAACCGATGGCTCCGGCAGCAACTTCGCTGGTAGCGACGG
CGGTCATTGTGACTTCGATTCTGGTGCCAATTCTTACCTCTATCTGGTCACGTAAAGTCAAAGCCAGAGCAGCGAAAATC
GAAATTTTAGGTACGGTGAAATAA

Upstream 100 bases:

>100_bases
TTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCATTGAGGAATTACGCATCAGCCCTTAAAAA
TATGCCGACAGGTGATGGAA

Downstream 100 bases:

>100_bases
ACCTGCTTCCTTAATCCCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCG
CAGATATTCCCGTGGCGAGC

Product: 2-keto-3-deoxygluconate permease

Products: Proton [Cytoplasm]; 2-dehydro-3-deoxy-D-gluconate [Cytoplasm] [C]

Alternate protein names: KDG permease [H]

Number of amino acids: Translated: 327; Mature: 327

Protein sequence:

>327_residues
MQIKRSIEKIPGGMMLVPLFLGALCHTFSPGAGKYFGSFTNGMITGTVPILAVWFFCMGASIKLSATGTVLRKSGTLVVT
KIAVAWVVAAIASRIIPEHGVEVGFFAGLSTLALVAAMDMTNGGLYASIMQQYGTKEEAGAFVLMSLESGPLMTMIILGT
AGIASFEPHVFVGAVLPFLVGFALGNLDPELREFFSKAVQTLIPFFAFALGNTIDLTVIAQTGLLGILLGVAVIIVTGIP
LIIADKLIGGGDGTAGIAASSSAGAAVATPVLIAEMVPAFKPMAPAATSLVATAVIVTSILVPILTSIWSRKVKARAAKI
EILGTVK

Sequences:

>Translated_327_residues
MQIKRSIEKIPGGMMLVPLFLGALCHTFSPGAGKYFGSFTNGMITGTVPILAVWFFCMGASIKLSATGTVLRKSGTLVVT
KIAVAWVVAAIASRIIPEHGVEVGFFAGLSTLALVAAMDMTNGGLYASIMQQYGTKEEAGAFVLMSLESGPLMTMIILGT
AGIASFEPHVFVGAVLPFLVGFALGNLDPELREFFSKAVQTLIPFFAFALGNTIDLTVIAQTGLLGILLGVAVIIVTGIP
LIIADKLIGGGDGTAGIAASSSAGAAVATPVLIAEMVPAFKPMAPAATSLVATAVIVTSILVPILTSIWSRKVKARAAKI
EILGTVK
>Mature_327_residues
MQIKRSIEKIPGGMMLVPLFLGALCHTFSPGAGKYFGSFTNGMITGTVPILAVWFFCMGASIKLSATGTVLRKSGTLVVT
KIAVAWVVAAIASRIIPEHGVEVGFFAGLSTLALVAAMDMTNGGLYASIMQQYGTKEEAGAFVLMSLESGPLMTMIILGT
AGIASFEPHVFVGAVLPFLVGFALGNLDPELREFFSKAVQTLIPFFAFALGNTIDLTVIAQTGLLGILLGVAVIIVTGIP
LIIADKLIGGGDGTAGIAASSSAGAAVATPVLIAEMVPAFKPMAPAATSLVATAVIVTSILVPILTSIWSRKVKARAAKI
EILGTVK

Specific function: The 2-keto-3-deoxygluconate permease transports the degraded pectin products into the bacterial cell, where they serve as carbon and energy sources. This is a hydrogen coupled transport system [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the kdgT transporter family [H]

Homologues:

Organism=Escherichia coli, GI87082349, Length=327, Percent_Identity=100, Blast_Score=636, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004684
- InterPro:   IPR018395
- ProDom:   PD024513 [H]

Pfam domain/function: PF03812 KdgT [H]

EC number: NA

Molecular weight: Translated: 33670; Mature: 33670

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIKRSIEKIPGGMMLVPLFLGALCHTFSPGAGKYFGSFTNGMITGTVPILAVWFFCMGA
CCCHHHHHHCCCCEEHHHHHHHHHHHHCCCCCCCHHHHHHCCEEEHHHHHHHHHHHHHCC
SIKLSATGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEHGVEVGFFAGLSTLALVAAMDM
CEEEECCCCEEECCCCEEHHHHHHHHHHHHHHHHHCHHCCCCHHHHHHHHHHHHHHHHHC
TNGGLYASIMQQYGTKEEAGAFVLMSLESGPLMTMIILGTAGIASFEPHVFVGAVLPFLV
CCCCHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHH
GFALGNLDPELREFFSKAVQTLIPFFAFALGNTIDLTVIAQTGLLGILLGVAVIIVTGIP
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHCCH
LIIADKLIGGGDGTAGIAASSSAGAAVATPVLIAEMVPAFKPMAPAATSLVATAVIVTSI
HHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
LVPILTSIWSRKVKARAAKIEILGTVK
HHHHHHHHHHHHHHHHHHEEEEEEECC
>Mature Secondary Structure
MQIKRSIEKIPGGMMLVPLFLGALCHTFSPGAGKYFGSFTNGMITGTVPILAVWFFCMGA
CCCHHHHHHCCCCEEHHHHHHHHHHHHCCCCCCCHHHHHHCCEEEHHHHHHHHHHHHHCC
SIKLSATGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEHGVEVGFFAGLSTLALVAAMDM
CEEEECCCCEEECCCCEEHHHHHHHHHHHHHHHHHCHHCCCCHHHHHHHHHHHHHHHHHC
TNGGLYASIMQQYGTKEEAGAFVLMSLESGPLMTMIILGTAGIASFEPHVFVGAVLPFLV
CCCCHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHH
GFALGNLDPELREFFSKAVQTLIPFFAFALGNTIDLTVIAQTGLLGILLGVAVIIVTGIP
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHCCH
LIIADKLIGGGDGTAGIAASSSAGAAVATPVLIAEMVPAFKPMAPAATSLVATAVIVTSI
HHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
LVPILTSIWSRKVKARAAKIEILGTVK
HHHHHHHHHHHHHHHHHHEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Proton [Periplasm]; 2-dehydro-3-deoxy-D-gluconate [Periplasm] [C]

Specific reaction: Proton [Periplasm] + 2-dehydro-3-deoxy-D-gluconate [Periplasm] = Proton [Cytoplasm] + 2-dehydro-3-deoxy-D-gluconate [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA