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The map label for this gene is yjdF

Identifier: 30064690

GI number: 30064690

Start: 3508543

End: 3509172

Strand: Reverse

Name: yjdF

Synonym: S3628

Alternate gene names: 30064690

Gene position: 3509172-3508543 (Counterclockwise)

Preceding gene: 30064691

Following gene: 30064687

Centisome position: 76.3

GC content: 55.08

Gene sequence:

>630_bases
ATGACCCGCACACTCAAGCCGTTAATTCTTAACACTGGCGCACTGGCGCTAACGTTAATCCTGATTTATACCGGCATTTC
GGCCCATGACAAACTCACCTGGCTGCTGGAAGTGACACCGGTGATTATCGTCGTGCCGCTACTACTTGCCACCGCCAGAC
GTTACCCGTTAACGCTGCTGCTCTATACGCTCATCTTCTTTCACGCCATCATCCTGATGGTAGGCGGGCAGTACACCTAC
GCGAAAGTCCCCGTTGGTTTTGAGGTGCAGGAATGGCTGGGGTTGAGTCGTAATCCGTATGACAAGCTGGGGCACTTTTT
CCAGGGGCTGGTGCCTGCACTGGTGGCACGAGAAATTCTCGTTCGCGGGATGTACGTGCGCGGACGTAAAATGGTGGCGT
TTCTGGTCTGTTGCGTGGCGCTGGCGATAAGCGCGATGTATGAATTAATCGAGTGGTGGGCGGCACTGGCGATGGGCCAG
GGAGCGGATGATTTTCTCGGTACCCAGGGCGACCAGTGGGACACGCAATCCGATATGTTCTGCGCGCTGCTTGGCGCATT
AACGACAGTGATATTGCTCGCTCGCTTTCATTGCCGCCAGCTACGGCGCTATGGCTTGATAACTGGATAA

Upstream 100 bases:

>100_bases
AGCATGCTGCCAGGTGATCCCCCTGGGCCACCTCTTTTGCGATTGTAATTTCATGCTTGCTGGTGAATAGTCAGTATTTT
CCCTGACTTGCGAACTCACC

Downstream 100 bases:

>100_bases
CAACGTGCACTTTGTTGATGCCGGATGCGGCGTGAATTCCTTATCCGGTCTACAAAATTTGCAAATCCAAAGCATTACAT
TAAGACGTGGCCTGATAAAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 208

Protein sequence:

>209_residues
MTRTLKPLILNTGALALTLILIYTGISAHDKLTWLLEVTPVIIVVPLLLATARRYPLTLLLYTLIFFHAIILMVGGQYTY
AKVPVGFEVQEWLGLSRNPYDKLGHFFQGLVPALVAREILVRGMYVRGRKMVAFLVCCVALAISAMYELIEWWAALAMGQ
GADDFLGTQGDQWDTQSDMFCALLGALTTVILLARFHCRQLRRYGLITG

Sequences:

>Translated_209_residues
MTRTLKPLILNTGALALTLILIYTGISAHDKLTWLLEVTPVIIVVPLLLATARRYPLTLLLYTLIFFHAIILMVGGQYTY
AKVPVGFEVQEWLGLSRNPYDKLGHFFQGLVPALVAREILVRGMYVRGRKMVAFLVCCVALAISAMYELIEWWAALAMGQ
GADDFLGTQGDQWDTQSDMFCALLGALTTVILLARFHCRQLRRYGLITG
>Mature_208_residues
TRTLKPLILNTGALALTLILIYTGISAHDKLTWLLEVTPVIIVVPLLLATARRYPLTLLLYTLIFFHAIILMVGGQYTYA
KVPVGFEVQEWLGLSRNPYDKLGHFFQGLVPALVAREILVRGMYVRGRKMVAFLVCCVALAISAMYELIEWWAALAMGQG
ADDFLGTQGDQWDTQSDMFCALLGALTTVILLARFHCRQLRRYGLITG

Specific function: Unknown

COG id: COG3647

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790562, Length=209, Percent_Identity=96.1722488038278, Blast_Score=406, Evalue=1e-115,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014509 [H]

Pfam domain/function: PF09997 DUF2238 [H]

EC number: NA

Molecular weight: Translated: 23365; Mature: 23234

Theoretical pI: Translated: 8.87; Mature: 8.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRTLKPLILNTGALALTLILIYTGISAHDKLTWLLEVTPVIIVVPLLLATARRYPLTLL
CCCCCCHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
LYTLIFFHAIILMVGGQYTYAKVPVGFEVQEWLGLSRNPYDKLGHFFQGLVPALVAREIL
HHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
VRGMYVRGRKMVAFLVCCVALAISAMYELIEWWAALAMGQGADDFLGTQGDQWDTQSDMF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCHHHHH
CALLGALTTVILLARFHCRQLRRYGLITG
HHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TRTLKPLILNTGALALTLILIYTGISAHDKLTWLLEVTPVIIVVPLLLATARRYPLTLL
CCCCCHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
LYTLIFFHAIILMVGGQYTYAKVPVGFEVQEWLGLSRNPYDKLGHFFQGLVPALVAREIL
HHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
VRGMYVRGRKMVAFLVCCVALAISAMYELIEWWAALAMGQGADDFLGTQGDQWDTQSDMF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCHHHHH
CALLGALTTVILLARFHCRQLRRYGLITG
HHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 2656658 [H]