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The map label for this gene is yrdB

Identifier: 30064602

GI number: 30064602

Start: 3402731

End: 3402988

Strand: Reverse

Name: yrdB

Synonym: S3536

Alternate gene names: 30064602

Gene position: 3402988-3402731 (Counterclockwise)

Preceding gene: 30064603

Following gene: 30064598

Centisome position: 73.99

GC content: 49.22

Gene sequence:

>258_bases
GTGAATCAGGCCATCCAGTTTCCGGACAGGGAAGAGTGGGACGAGAATAAAAAATGTGTATGTTTTCCCGCTCTCGTGAA
TGGTATGCAACTGACATGCGCGATCTCTGGCGAGAGTCTGGCGTATCGCTTTACTGGAGATACGCCAGAACAGTGGTTAG
CGAGTTTTCGTCAGCATCGCTGGGACCTGGAAGAAGAAGCGGAAAACTTAATTCAGGAACAAAGTGAAGATGATCAAGGC
TGGGTCTGGTTACCCTGA

Upstream 100 bases:

>100_bases
GAATGCTGGTGGCACAGGCGGCTCATGCCTTTCTTCTCTGGCACGGTGTTCTGCCTGACGTAGAACCAGTTATAAAGCAA
TTGCAGGAGGAATTGTCCGC

Downstream 100 bases:

>100_bases
TCCAGATATTCGTCCTTCCATTTCACGTAATTATTCGCGGAATAGCGTAACCCAGCCTTCTCTTCATCACTTAACGGGCG
GATCTGTTTGACGGGGCTAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 85; Mature: 85

Protein sequence:

>85_residues
MNQAIQFPDREEWDENKKCVCFPALVNGMQLTCAISGESLAYRFTGDTPEQWLASFRQHRWDLEEEAENLIQEQSEDDQG
WVWLP

Sequences:

>Translated_85_residues
MNQAIQFPDREEWDENKKCVCFPALVNGMQLTCAISGESLAYRFTGDTPEQWLASFRQHRWDLEEEAENLIQEQSEDDQG
WVWLP
>Mature_85_residues
MNQAIQFPDREEWDENKKCVCFPALVNGMQLTCAISGESLAYRFTGDTPEQWLASFRQHRWDLEEEAENLIQEQSEDDQG
WVWLP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789674, Length=85, Percent_Identity=100, Blast_Score=178, Evalue=7e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YRDB_ECOLI (P45795)

Other databases:

- EMBL:   U18997
- EMBL:   U00096
- EMBL:   AP009048
- PIR:   C65120
- RefSeq:   AP_004510.1
- RefSeq:   NP_417739.1
- ProteinModelPortal:   P45795
- SMR:   P45795
- STRING:   P45795
- EnsemblBacteria:   EBESCT00000000326
- EnsemblBacteria:   EBESCT00000014250
- GeneID:   947774
- GenomeReviews:   AP009048_GR
- GenomeReviews:   U00096_GR
- KEGG:   ecj:JW3241
- KEGG:   eco:b3280
- EchoBASE:   EB2688
- EcoGene:   EG12839
- eggNOG:   NOG08880
- GeneTree:   EBGT00050000011569
- HOGENOM:   HBG637110
- OMA:   ANIECRI
- ProtClustDB:   CLSK880635
- BioCyc:   EcoCyc:G7697-MONOMER
- Genevestigator:   P45795
- InterPro:   IPR009962

Pfam domain/function: PF07369 DUF1488

EC number: NA

Molecular weight: Translated: 10007; Mature: 10007

Theoretical pI: Translated: 3.91; Mature: 3.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQAIQFPDREEWDENKKCVCFPALVNGMQLTCAISGESLAYRFTGDTPEQWLASFRQHR
CCCCCCCCCCCCCCCCCCEEEEHHHHCCEEEEEEECCCCEEEEECCCCHHHHHHHHHHHC
WDLEEEAENLIQEQSEDDQGWVWLP
CCCHHHHHHHHHHCCCCCCCEEECC
>Mature Secondary Structure
MNQAIQFPDREEWDENKKCVCFPALVNGMQLTCAISGESLAYRFTGDTPEQWLASFRQHR
CCCCCCCCCCCCCCCCCCEEEEHHHHCCEEEEEEECCCCEEEEECCCCHHHHHHHHHHHC
WDLEEEAENLIQEQSEDDQGWVWLP
CCCHHHHHHHHHHCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503