Definition | Shigella flexneri 2a str. 2457T, complete genome. |
---|---|
Accession | NC_004741 |
Length | 4,599,354 |
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The map label for this gene is yhdP
Identifier: 30064577
GI number: 30064577
Start: 3370112
End: 3373072
Strand: Reverse
Name: yhdP
Synonym: S3500
Alternate gene names: 30064577
Gene position: 3373072-3370112 (Counterclockwise)
Preceding gene: 30064578
Following gene: 30064576
Centisome position: 73.34
GC content: 52.41
Gene sequence:
>2961_bases GTGGATAATCTGACCGCGCATATTACGCGTGAAAATCCGGGCTGGCAGTTCTCTATTCCCGATACACGGATCACGATGGA CGGCAAACCCTGGCCGAGCGGAGCATTGACGCTGGCCTGGATACCGGAACAGGACGTTGGCGGCAAAGACAATAAACGCA GTGACGAACTCCGGATTCGCGCTAGTAATCTGGAGCTGGCAGGCCTGGAGGGCATACGCCCGCTGGCCGCGAAACTTTCA CCTGCACTGGGTGATGTTTGGCGCTCCACACAACCGAGCGGCAAGATTAACACTCTGGCGCTGGATATCCCGCTTCAGGC GGCAGACAAGACCCGTTTTCAGGCATCGTGGAGCGATCTGGCCTGGAAGCAATGGAAATTATTACCGGGTGCGGAACACT TCTCCGGGACGCTTTCCGGCAGCGTTGAAAATGGTTTGCTTACCGCGTCGATGAAGCAGGCAAAGATGCCTTACGAAACG GTATTCCGTGCGCCACTGGAAATCGCCGACGGCCAGGCAACTATAAGCTGGCTGAACAATGACAAAGGTTTCCAGCTGGA TGGGCGTAATATTGACGTTAAAGCCAAAGCCGTCCATGCGCGCGGCGGTTTTCGTTACCTGCAACCTGCTAACGATGAAC CCTGGCTGGGTATTCTGGCTGGCATCAGTACCGATGATGGTTCACAAGCCTGGCGCTATTTCCCGGAAAACTTGATGGGT AAAGACCTGGTTGATTATTTAAGTGGTGCGATTCAGGGCGGTGAAGCGGATAACGCGACGCTGGTTTATGGTGGCAATCC GCAACTCTTCCCCTATAAACACAACGAAGGTCAGTTTGAAGTGCTGGTGCCGCTGCGCAACGCGAAGTTTGCCTTCCAGC CGGACTGGCCTGCATTAACTAACCTTGATATTGAACTGGACTTTATTAACGACGGTTTATGGATGAAAACCGATGGCGTT AATCTGGGCGGCGTGCGCGCGAGTAATCTCACCGCAGTGATCCCTGACTACTCAAAAGAAAAACTGCTGATTGACGCTGA CATTAAAGGTCCGGGTAAAGCCGTTGGCCCTTACTTTGATGAGACACCGCTGAAAGATTCTCTGGGTGCGACCCTGCAAG AACTCCAGCTCGACGGCGATGTGAATGCTCGCTTACATCTTGATATCCCGCTGAACGGCGAACTGGTAACCGCGAAAGGT GAAGTGACGCTGCGTAATAACAGTCTGTTTATCAAACCACTCGACAGCATCCTGAAAAATTTGAGCGGTAAATTCAGCTT TATCAATGGCGATCTGCAAAGTGAACCACTGACAGCAAGCTGGTTTAATCAGCCGTTGAACGTGGATTTTTCCACCAAAG AAGGGGCAAAAGCCTACCAGGTTGCGGTGAATCTCAACGGTAACTGGCAACCGGCGAAAACCGGCGTTCTGCCTGAAGCG GTGAACGAAGCATTGAGTGGCAGCGTGGCGTGGGATGGTAAAGTGGGCATTGATCTGCCTTATCATGCTGGCGCGACCTA TAACGTAGAGCTGAACGGCGATCTGAATAATGTGAGTAGTCACTTACCTTCACCGTTAGCCAAACCTGCGGGTGAACCAC TAGCGGTAAACGTTAAGGTTGATGGCAATCTCAACAGCTTTGAATTAACCGGACAGGCTGGTGCGGATAACCATTTCAAT AGCCGCTGGTTGCTTGGTCAAAAGCTGACGCTCGATCGTGCTATTTGGGCGGCAGACAGTAAAACGCTCCCGCCGTTGCC GGAACAAAGTGGCGTTGAACTTAATATGCCGCCGATGAATGGTGCCGAGTGGCTGGCCCTGTTCCAGAAAGGCGCTGCGG AGAGTGTCGGTGGTGCAGCGAGTTTCCCACAACACATAACGTTACGTACGCCTATGTTGTCACTGGGAAATCAGCAATGG AATAACCTGAGTATTGTTTCGCAACCGACGGCAAATGGCACCCTGGTTGAGGCGCAAGGGCGTGAAATCAACGCCACGCT AGCGATGCGTAATAACGCGCCGTGGCTGGCGAATATCAAATATCTTTATTACAACCCGAGCGTGGCGAAAACTCGTGGTG ATTCAACGCCGTCATCACCTTTCCCGACAACGGAGCGCATTAACTTCCGTGGCTGGCCGGACGCACAAATACGATGCACA GAGTGCTGGTTCTGGGGGCAAAAATTCGGTCGCATTGACAGTGATATCACCATTTCTGGCGATACGTTAACGCTGACCAA TGGACTGATTGATACTGGTTTCTCGCGGCTTACTGCCGATGGTGAATGGGTTAATAATCCGGGGAATGAACGTACCTCGC TGAAAGGAAAACTGCGTGGGCAGAAAATTGATGCCGCCGCAGAATTTTTTGGTGTCACGACGCCCATACGCCAGTCGTCA TTTAATGTGGATTACGATTTACACTGGCGCAAAGCACCCTGGCAGCCAGATGAAGCGACGTTGAATGGCATCATTCATAC TCAACTGGGTAAAGGCGAAATTACCGAAATCAATACCGGACATGCCGGGCAATTGCTGCGCTTATTGAGCGTAGATGCCC TGATGCGTAAGCTGCGTTTTGATTTCAGAGACACTTTTGGCGAAGGGTTCTATTTTGACTCCATTCGCAGCACCGCGTGG ATTAAAGACGGCGTTATGCACACCGACGACACGCTGGTGGATGGCCTGGAGGCGGATATCGCCATGAAAGGGTCGGTAAA TCTGGTACGCCGCGACCTGAATATGGAAGCGGTTGTCGCACCAGAGATTTCTGCGACGGTGGGCGTGGCTGCGGCTTTTG CGGTTAACCCCATTGTTGGCGCGGCAGTGTTTGCCGCCAGTAAAGTGCTGGGGCCGCTGTGGAGCAAAGTCTCCATTTTG CGCTATCACATTTCGGGTCCGCTGGACGATCCGCAAATCAACGAAGTGTTGCGCCAACCGCGTAAAGAAAAAGCGCAATG A
Upstream 100 bases:
>100_bases CTGGATGACGATCGACAAAGGCGATGTAACCGGCGGTGACGTCTGGCTGAAACAGGGCGGTGCCAGCTGGTTGGGCGAGA AGCAAACGCATACGCTGTCG
Downstream 100 bases:
>100_bases TTTGACGAGGGCGCGTAATTGCCCCAATCTCATATGATAATCGTTGCCAAAGGCCAACGAGCCGGAACATAACTGTAGGC CGGATAGGGCGTTCACGCCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 986; Mature: 986
Protein sequence:
>986_residues MDNLTAHITRENPGWQFSIPDTRITMDGKPWPSGALTLAWIPEQDVGGKDNKRSDELRIRASNLELAGLEGIRPLAAKLS PALGDVWRSTQPSGKINTLALDIPLQAADKTRFQASWSDLAWKQWKLLPGAEHFSGTLSGSVENGLLTASMKQAKMPYET VFRAPLEIADGQATISWLNNDKGFQLDGRNIDVKAKAVHARGGFRYLQPANDEPWLGILAGISTDDGSQAWRYFPENLMG KDLVDYLSGAIQGGEADNATLVYGGNPQLFPYKHNEGQFEVLVPLRNAKFAFQPDWPALTNLDIELDFINDGLWMKTDGV NLGGVRASNLTAVIPDYSKEKLLIDADIKGPGKAVGPYFDETPLKDSLGATLQELQLDGDVNARLHLDIPLNGELVTAKG EVTLRNNSLFIKPLDSILKNLSGKFSFINGDLQSEPLTASWFNQPLNVDFSTKEGAKAYQVAVNLNGNWQPAKTGVLPEA VNEALSGSVAWDGKVGIDLPYHAGATYNVELNGDLNNVSSHLPSPLAKPAGEPLAVNVKVDGNLNSFELTGQAGADNHFN SRWLLGQKLTLDRAIWAADSKTLPPLPEQSGVELNMPPMNGAEWLALFQKGAAESVGGAASFPQHITLRTPMLSLGNQQW NNLSIVSQPTANGTLVEAQGREINATLAMRNNAPWLANIKYLYYNPSVAKTRGDSTPSSPFPTTERINFRGWPDAQIRCT ECWFWGQKFGRIDSDITISGDTLTLTNGLIDTGFSRLTADGEWVNNPGNERTSLKGKLRGQKIDAAAEFFGVTTPIRQSS FNVDYDLHWRKAPWQPDEATLNGIIHTQLGKGEITEINTGHAGQLLRLLSVDALMRKLRFDFRDTFGEGFYFDSIRSTAW IKDGVMHTDDTLVDGLEADIAMKGSVNLVRRDLNMEAVVAPEISATVGVAAAFAVNPIVGAAVFAASKVLGPLWSKVSIL RYHISGPLDDPQINEVLRQPRKEKAQ
Sequences:
>Translated_986_residues MDNLTAHITRENPGWQFSIPDTRITMDGKPWPSGALTLAWIPEQDVGGKDNKRSDELRIRASNLELAGLEGIRPLAAKLS PALGDVWRSTQPSGKINTLALDIPLQAADKTRFQASWSDLAWKQWKLLPGAEHFSGTLSGSVENGLLTASMKQAKMPYET VFRAPLEIADGQATISWLNNDKGFQLDGRNIDVKAKAVHARGGFRYLQPANDEPWLGILAGISTDDGSQAWRYFPENLMG KDLVDYLSGAIQGGEADNATLVYGGNPQLFPYKHNEGQFEVLVPLRNAKFAFQPDWPALTNLDIELDFINDGLWMKTDGV NLGGVRASNLTAVIPDYSKEKLLIDADIKGPGKAVGPYFDETPLKDSLGATLQELQLDGDVNARLHLDIPLNGELVTAKG EVTLRNNSLFIKPLDSILKNLSGKFSFINGDLQSEPLTASWFNQPLNVDFSTKEGAKAYQVAVNLNGNWQPAKTGVLPEA VNEALSGSVAWDGKVGIDLPYHAGATYNVELNGDLNNVSSHLPSPLAKPAGEPLAVNVKVDGNLNSFELTGQAGADNHFN SRWLLGQKLTLDRAIWAADSKTLPPLPEQSGVELNMPPMNGAEWLALFQKGAAESVGGAASFPQHITLRTPMLSLGNQQW NNLSIVSQPTANGTLVEAQGREINATLAMRNNAPWLANIKYLYYNPSVAKTRGDSTPSSPFPTTERINFRGWPDAQIRCT ECWFWGQKFGRIDSDITISGDTLTLTNGLIDTGFSRLTADGEWVNNPGNERTSLKGKLRGQKIDAAAEFFGVTTPIRQSS FNVDYDLHWRKAPWQPDEATLNGIIHTQLGKGEITEINTGHAGQLLRLLSVDALMRKLRFDFRDTFGEGFYFDSIRSTAW IKDGVMHTDDTLVDGLEADIAMKGSVNLVRRDLNMEAVVAPEISATVGVAAAFAVNPIVGAAVFAASKVLGPLWSKVSIL RYHISGPLDDPQINEVLRQPRKEKAQ >Mature_986_residues MDNLTAHITRENPGWQFSIPDTRITMDGKPWPSGALTLAWIPEQDVGGKDNKRSDELRIRASNLELAGLEGIRPLAAKLS PALGDVWRSTQPSGKINTLALDIPLQAADKTRFQASWSDLAWKQWKLLPGAEHFSGTLSGSVENGLLTASMKQAKMPYET VFRAPLEIADGQATISWLNNDKGFQLDGRNIDVKAKAVHARGGFRYLQPANDEPWLGILAGISTDDGSQAWRYFPENLMG KDLVDYLSGAIQGGEADNATLVYGGNPQLFPYKHNEGQFEVLVPLRNAKFAFQPDWPALTNLDIELDFINDGLWMKTDGV NLGGVRASNLTAVIPDYSKEKLLIDADIKGPGKAVGPYFDETPLKDSLGATLQELQLDGDVNARLHLDIPLNGELVTAKG EVTLRNNSLFIKPLDSILKNLSGKFSFINGDLQSEPLTASWFNQPLNVDFSTKEGAKAYQVAVNLNGNWQPAKTGVLPEA VNEALSGSVAWDGKVGIDLPYHAGATYNVELNGDLNNVSSHLPSPLAKPAGEPLAVNVKVDGNLNSFELTGQAGADNHFN SRWLLGQKLTLDRAIWAADSKTLPPLPEQSGVELNMPPMNGAEWLALFQKGAAESVGGAASFPQHITLRTPMLSLGNQQW NNLSIVSQPTANGTLVEAQGREINATLAMRNNAPWLANIKYLYYNPSVAKTRGDSTPSSPFPTTERINFRGWPDAQIRCT ECWFWGQKFGRIDSDITISGDTLTLTNGLIDTGFSRLTADGEWVNNPGNERTSLKGKLRGQKIDAAAEFFGVTTPIRQSS FNVDYDLHWRKAPWQPDEATLNGIIHTQLGKGEITEINTGHAGQLLRLLSVDALMRKLRFDFRDTFGEGFYFDSIRSTAW IKDGVMHTDDTLVDGLEADIAMKGSVNLVRRDLNMEAVVAPEISATVGVAAAFAVNPIVGAAVFAASKVLGPLWSKVSIL RYHISGPLDDPQINEVLRQPRKEKAQ
Specific function: Unknown
COG id: COG3164
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI48994929, Length=986, Percent_Identity=99.3914807302231, Blast_Score=1995, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011836 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 107643; Mature: 107643
Theoretical pI: Translated: 5.14; Mature: 5.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDNLTAHITRENPGWQFSIPDTRITMDGKPWPSGALTLAWIPEQDVGGKDNKRSDELRIR CCCCEEEEEECCCCEEEECCCCEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEE ASNLELAGLEGIRPLAAKLSPALGDVWRSTQPSGKINTLALDIPLQAADKTRFQASWSDL ECCEEEECCCCCCHHHHHHCHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCEEECCHHHC AWKQWKLLPGAEHFSGTLSGSVENGLLTASMKQAKMPYETVFRAPLEIADGQATISWLNN CCEEEEECCCCHHCCCEECCCCCCCEEEECHHHHCCCHHHHHCCCCEECCCCEEEEEECC DKGFQLDGRNIDVKAKAVHARGGFRYLQPANDEPWLGILAGISTDDGSQAWRYFPENLMG CCCEEECCCEEEEEEEEEEECCCEEEECCCCCCCCEEEEEECCCCCCCHHHHHCCHHHCH KDLVDYLSGAIQGGEADNATLVYGGNPQLFPYKHNEGQFEVLVPLRNAKFAFQPDWPALT HHHHHHHHHHCCCCCCCCCEEEECCCCCEEEEECCCCCEEEEEEECCCEEEECCCCCCCE NLDIELDFINDGLWMKTDGVNLGGVRASNLTAVIPDYSKEKLLIDADIKGPGKAVGPYFD ECEEEEEEECCCEEEEECCCCCCCEECCCEEEECCCCCCCEEEEEECCCCCCCCCCCCCC ETPLKDSLGATLQELQLDGDVNARLHLDIPLNGELVTAKGEVTLRNNSLFIKPLDSILKN CCCCHHHHCCHHHHEEECCCCCEEEEEEECCCCEEEEECCEEEEECCEEEEEEHHHHHHH LSGKFSFINGDLQSEPLTASWFNQPLNVDFSTKEGAKAYQVAVNLNGNWQPAKTGVLPEA CCCCEEEEECCCCCCCCCHHHCCCCCCEEECCCCCCEEEEEEEEECCCCCCCCCCCCHHH VNEALSGSVAWDGKVGIDLPYHAGATYNVELNGDLNNVSSHLPSPLAKPAGEPLAVNVKV HHHHHCCCEEECCEECEECCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCCEEEEEEE DGNLNSFELTGQAGADNHFNSRWLLGQKLTLDRAIWAADSKTLPPLPEQSGVELNMPPMN CCCCCEEEEECCCCCCCCCCCEEEECCEEEHHHEEEECCCCCCCCCCCCCCCEEECCCCC GAEWLALFQKGAAESVGGAASFPQHITLRTPMLSLGNQQWNNLSIVSQPTANGTLVEAQG CHHHHHHHHHCCCCCCCCCCCCCCEEEEECCHHHCCCCCCCCEEEEECCCCCCEEEEECC REINATLAMRNNAPWLANIKYLYYNPSVAKTRGDSTPSSPFPTTERINFRGWPDAQIRCT CEEEEEEEEECCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEE ECWFWGQKFGRIDSDITISGDTLTLTNGLIDTGFSRLTADGEWVNNPGNERTSLKGKLRG EEEEEHHHHCCCCCCEEECCCEEEEECCCHHCCHHHEECCCCCCCCCCCCCCEEEHCCCC QKIDAAAEFFGVTTPIRQSSFNVDYDLHWRKAPWQPDEATLNGIIHTQLGKGEITEINTG CEECHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCHHCCEEEEEECCCCCEEEECCC HAGQLLRLLSVDALMRKLRFDFRDTFGEGFYFDSIRSTAWIKDGVMHTDDTLVDGLEADI CHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCEEEECCCCCCCCHHHCCCCCCE AMKGSVNLVRRDLNMEAVVAPEISATVGVAAAFAVNPIVGAAVFAASKVLGPLWSKVSIL EECCCCEEEEECCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE RYHISGPLDDPQINEVLRQPRKEKAQ EEEECCCCCCHHHHHHHHCCHHHHCC >Mature Secondary Structure MDNLTAHITRENPGWQFSIPDTRITMDGKPWPSGALTLAWIPEQDVGGKDNKRSDELRIR CCCCEEEEEECCCCEEEECCCCEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEE ASNLELAGLEGIRPLAAKLSPALGDVWRSTQPSGKINTLALDIPLQAADKTRFQASWSDL ECCEEEECCCCCCHHHHHHCHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCEEECCHHHC AWKQWKLLPGAEHFSGTLSGSVENGLLTASMKQAKMPYETVFRAPLEIADGQATISWLNN CCEEEEECCCCHHCCCEECCCCCCCEEEECHHHHCCCHHHHHCCCCEECCCCEEEEEECC DKGFQLDGRNIDVKAKAVHARGGFRYLQPANDEPWLGILAGISTDDGSQAWRYFPENLMG CCCEEECCCEEEEEEEEEEECCCEEEECCCCCCCCEEEEEECCCCCCCHHHHHCCHHHCH KDLVDYLSGAIQGGEADNATLVYGGNPQLFPYKHNEGQFEVLVPLRNAKFAFQPDWPALT HHHHHHHHHHCCCCCCCCCEEEECCCCCEEEEECCCCCEEEEEEECCCEEEECCCCCCCE NLDIELDFINDGLWMKTDGVNLGGVRASNLTAVIPDYSKEKLLIDADIKGPGKAVGPYFD ECEEEEEEECCCEEEEECCCCCCCEECCCEEEECCCCCCCEEEEEECCCCCCCCCCCCCC ETPLKDSLGATLQELQLDGDVNARLHLDIPLNGELVTAKGEVTLRNNSLFIKPLDSILKN CCCCHHHHCCHHHHEEECCCCCEEEEEEECCCCEEEEECCEEEEECCEEEEEEHHHHHHH LSGKFSFINGDLQSEPLTASWFNQPLNVDFSTKEGAKAYQVAVNLNGNWQPAKTGVLPEA CCCCEEEEECCCCCCCCCHHHCCCCCCEEECCCCCCEEEEEEEEECCCCCCCCCCCCHHH VNEALSGSVAWDGKVGIDLPYHAGATYNVELNGDLNNVSSHLPSPLAKPAGEPLAVNVKV HHHHHCCCEEECCEECEECCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCCEEEEEEE DGNLNSFELTGQAGADNHFNSRWLLGQKLTLDRAIWAADSKTLPPLPEQSGVELNMPPMN CCCCCEEEEECCCCCCCCCCCEEEECCEEEHHHEEEECCCCCCCCCCCCCCCEEECCCCC GAEWLALFQKGAAESVGGAASFPQHITLRTPMLSLGNQQWNNLSIVSQPTANGTLVEAQG CHHHHHHHHHCCCCCCCCCCCCCCEEEEECCHHHCCCCCCCCEEEEECCCCCCEEEEECC REINATLAMRNNAPWLANIKYLYYNPSVAKTRGDSTPSSPFPTTERINFRGWPDAQIRCT CEEEEEEEEECCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEE ECWFWGQKFGRIDSDITISGDTLTLTNGLIDTGFSRLTADGEWVNNPGNERTSLKGKLRG EEEEEHHHHCCCCCCEEECCCEEEEECCCHHCCHHHEECCCCCCCCCCCCCCEEEHCCCC QKIDAAAEFFGVTTPIRQSSFNVDYDLHWRKAPWQPDEATLNGIIHTQLGKGEITEINTG CEECHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCHHCCEEEEEECCCCCEEEECCC HAGQLLRLLSVDALMRKLRFDFRDTFGEGFYFDSIRSTAWIKDGVMHTDDTLVDGLEADI CHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCEEEECCCCCCCCHHHCCCCCCE AMKGSVNLVRRDLNMEAVVAPEISATVGVAAAFAVNPIVGAAVFAASKVLGPLWSKVSIL EECCCCEEEEECCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE RYHISGPLDDPQINEVLRQPRKEKAQ EEEECCCCCCHHHHHHHHCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9278503; 1937035 [H]