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The map label for this gene is yraR

Identifier: 30064492

GI number: 30064492

Start: 3281534

End: 3282214

Strand: Reverse

Name: yraR

Synonym: S3410

Alternate gene names: 30064492

Gene position: 3282214-3281534 (Counterclockwise)

Preceding gene: 30064494

Following gene: 30064491

Centisome position: 71.36

GC content: 54.77

Gene sequence:

>681_bases
ATGAGCCGGGGAGCGCAAGGCAGACAATTCTGTAAAGGAACGAAGATGAGTCAGGTACTGATTACAGGCGCAACGGGGCT
GGTGGGCGGTCACCTGCTGCGGATGTTGATTAATGAACCGAAAGTTAACGCCATTGCTGCGCCGACGCGACGTCCGTTGG
GCGATATGCCCGGGGTGTTTAATCCCCATGATCCGCAACTGAGTGACGCGTTGGCGCAGGTCACCGAACCCATCGACATT
GTGTTTTGTTGTCTCGGCACCACGCGGCGAGAAGCGGGGAGCAAAGAGGCGTTTATTCATGCCGATTACACGCTGGTAGT
GGATACCGCATTAACCGGGCGGCGACTGGGCGCGCAGCATATGCTGGTGGTCAGTGCTATGGGTGCCAATGCCCACTCGC
CGTTTTTCTATAACCGCGTCAAAGGGGAGATGGAAGAAGCATTAATTGCCCAGAACTGGCCGAAATTGACCATTGCTCGC
CCGTCGATGTTACTGGGCGATCGTAGCAAACAGCGGATGAACGAAACGCTTTTTGCGCCGCTGTTCCGTTTGTTACCAGG
TAACTGGAAATCCATTGATGCGAGAGACGTGGCGCGGGTCATGCTGGCAGAGGCGATGCGGCCTGAGCATGAAGGCGTGA
CGATTTTAAGCTCTTCAGAATTACGCAAAAGAGCTGAATAA

Upstream 100 bases:

>100_bases
GGCAATTTTCTTACTCATGCTTCCTCCGCGTTGTTGCATTGGATGAGGCGAATTTTCCACAATCGGGGATAATTACCTCA
TGGTCTATTAAGACTGGTGC

Downstream 100 bases:

>100_bases
TTATTCCCAAGAATTGATAGTGAGCGTAATATTCACGCGCTCAATTATCATAACTTATTCCTGGGGAATGCTATGACTGG
TCAGTCTTCATCTCAGGCGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 225

Protein sequence:

>226_residues
MSRGAQGRQFCKGTKMSQVLITGATGLVGGHLLRMLINEPKVNAIAAPTRRPLGDMPGVFNPHDPQLSDALAQVTEPIDI
VFCCLGTTRREAGSKEAFIHADYTLVVDTALTGRRLGAQHMLVVSAMGANAHSPFFYNRVKGEMEEALIAQNWPKLTIAR
PSMLLGDRSKQRMNETLFAPLFRLLPGNWKSIDARDVARVMLAEAMRPEHEGVTILSSSELRKRAE

Sequences:

>Translated_226_residues
MSRGAQGRQFCKGTKMSQVLITGATGLVGGHLLRMLINEPKVNAIAAPTRRPLGDMPGVFNPHDPQLSDALAQVTEPIDI
VFCCLGTTRREAGSKEAFIHADYTLVVDTALTGRRLGAQHMLVVSAMGANAHSPFFYNRVKGEMEEALIAQNWPKLTIAR
PSMLLGDRSKQRMNETLFAPLFRLLPGNWKSIDARDVARVMLAEAMRPEHEGVTILSSSELRKRAE
>Mature_225_residues
SRGAQGRQFCKGTKMSQVLITGATGLVGGHLLRMLINEPKVNAIAAPTRRPLGDMPGVFNPHDPQLSDALAQVTEPIDIV
FCCLGTTRREAGSKEAFIHADYTLVVDTALTGRRLGAQHMLVVSAMGANAHSPFFYNRVKGEMEEALIAQNWPKLTIARP
SMLLGDRSKQRMNETLFAPLFRLLPGNWKSIDARDVARVMLAEAMRPEHEGVTILSSSELRKRAE

Specific function: Unknown

COG id: COG0702

COG function: function code MG; Predicted nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To yeast YER004W [H]

Homologues:

Organism=Homo sapiens, GI148728172, Length=208, Percent_Identity=31.7307692307692, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI148728168, Length=208, Percent_Identity=31.7307692307692, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI148728164, Length=208, Percent_Identity=31.7307692307692, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI148728166, Length=211, Percent_Identity=31.2796208530806, Blast_Score=99, Evalue=2e-21,
Organism=Escherichia coli, GI87082218, Length=211, Percent_Identity=99.0521327014218, Blast_Score=433, Evalue=1e-123,
Organism=Caenorhabditis elegans, GI71983631, Length=213, Percent_Identity=30.9859154929577, Blast_Score=100, Evalue=1e-21,
Organism=Saccharomyces cerevisiae, GI6320840, Length=160, Percent_Identity=30, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000534 [H]

Pfam domain/function: PF01118 Semialdhyde_dh [H]

EC number: NA

Molecular weight: Translated: 24833; Mature: 24702

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRGAQGRQFCKGTKMSQVLITGATGLVGGHLLRMLINEPKVNAIAAPTRRPLGDMPGVF
CCCCCCCHHHHCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCC
NPHDPQLSDALAQVTEPIDIVFCCLGTTRREAGSKEAFIHADYTLVVDTALTGRRLGAQH
CCCCCHHHHHHHHHCCCHHEEEECCCCHHHHCCCCCEEEECCEEEEEECCCCCCCCCCHH
MLVVSAMGANAHSPFFYNRVKGEMEEALIAQNWPKLTIARPSMLLGDRSKQRMNETLFAP
EEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCHHHHHHHHHHHH
LFRLLPGNWKSIDARDVARVMLAEAMRPEHEGVTILSSSELRKRAE
HHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHCC
>Mature Secondary Structure 
SRGAQGRQFCKGTKMSQVLITGATGLVGGHLLRMLINEPKVNAIAAPTRRPLGDMPGVF
CCCCCCHHHHCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCC
NPHDPQLSDALAQVTEPIDIVFCCLGTTRREAGSKEAFIHADYTLVVDTALTGRRLGAQH
CCCCCHHHHHHHHHCCCHHEEEECCCCHHHHCCCCCEEEECCEEEEEECCCCCCCCCCHH
MLVVSAMGANAHSPFFYNRVKGEMEEALIAQNWPKLTIARPSMLLGDRSKQRMNETLFAP
EEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCHHHHHHHHHHHH
LFRLLPGNWKSIDARDVARVMLAEAMRPEHEGVTILSSSELRKRAE
HHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]