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The map label for this gene is ttdB

Identifier: 30064410

GI number: 30064410

Start: 3185072

End: 3185677

Strand: Direct

Name: ttdB

Synonym: S3308

Alternate gene names: 30064410

Gene position: 3185072-3185677 (Clockwise)

Preceding gene: 30064409

Following gene: 30064411

Centisome position: 69.25

GC content: 53.3

Gene sequence:

>606_bases
ATGAAAAAGATCCTGACAACCCCGATCAAAGCTGAAGATCTGCAAGATATTCGCGTCGGCGATGTGATCTACCTGACCGG
TACGCTGGTGACCTGCCGCGACGTTTGTCACCGCCGTTTGATCGAACTGAAACGTCCGATCCCTTACGATCTCAACGGCA
AAGCGATTTTCCACGCTGGCCCCATCGTGCGCAAAAACGGCGACAAATGGGAGATGGTCTCCGTCGGCCCGACAACCAGT
ATGCGTATGGAAAGTTTTGAACGTGAATTTATTGAGCAGACCGGCGTAAAACTGGTGGTTGGCAAAGGTGGTATGGGGCC
GCTGACCGAAGAAGGCTGCCAGAAATTCAAGGCGTTACATGTGATTTTCCCAGCAGGCTGCGCGGTGCTGGCGGCAACCC
AGGTAGAAGAGATTGAAGAAGTGCACTGGACAGAACTCGGGATGCCGGAGTCACTGTGGGTCTGCCGGGTCAAAGAGTTC
GGCCCGCTGATTGTCTCTATTGATACCCACGGCAACAACCTGATAGCCGAAAACAAAAAGCTGTTCGCCGAACGCCGCGA
TCCCATCGTGGAAGAGATCTGCGAGCACGTCCATTACATCAAATAA

Upstream 100 bases:

>100_bases
GCTGACCGGCAACAGTTCAGTGATGGGCGCATCGTCGCGGCACGCTGCTGGTTCATGCCGATCTCACCTTTGAAAATCTG
TCTCACACCCGGAGCGCGTT

Downstream 100 bases:

>100_bases
CCCTCCCGGAGAGGCTCACCCCTCTCCTTTTTCGCAGGCATAACACGATGAAACCTTCCACTGAATGGTGGCGATATCTT
GCGCCGCTGGCGGTCATCGC

Product: L(+)-tartrate dehydratase subunit beta

Products: NA

Alternate protein names: L-TTD beta [H]

Number of amino acids: Translated: 201; Mature: 201

Protein sequence:

>201_residues
MKKILTTPIKAEDLQDIRVGDVIYLTGTLVTCRDVCHRRLIELKRPIPYDLNGKAIFHAGPIVRKNGDKWEMVSVGPTTS
MRMESFEREFIEQTGVKLVVGKGGMGPLTEEGCQKFKALHVIFPAGCAVLAATQVEEIEEVHWTELGMPESLWVCRVKEF
GPLIVSIDTHGNNLIAENKKLFAERRDPIVEEICEHVHYIK

Sequences:

>Translated_201_residues
MKKILTTPIKAEDLQDIRVGDVIYLTGTLVTCRDVCHRRLIELKRPIPYDLNGKAIFHAGPIVRKNGDKWEMVSVGPTTS
MRMESFEREFIEQTGVKLVVGKGGMGPLTEEGCQKFKALHVIFPAGCAVLAATQVEEIEEVHWTELGMPESLWVCRVKEF
GPLIVSIDTHGNNLIAENKKLFAERRDPIVEEICEHVHYIK
>Mature_201_residues
MKKILTTPIKAEDLQDIRVGDVIYLTGTLVTCRDVCHRRLIELKRPIPYDLNGKAIFHAGPIVRKNGDKWEMVSVGPTTS
MRMESFEREFIEQTGVKLVVGKGGMGPLTEEGCQKFKALHVIFPAGCAVLAATQVEEIEEVHWTELGMPESLWVCRVKEF
GPLIVSIDTHGNNLIAENKKLFAERRDPIVEEICEHVHYIK

Specific function: Unknown

COG id: COG1838

COG function: function code C; Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I fumarase family [H]

Homologues:

Organism=Escherichia coli, GI1789443, Length=201, Percent_Identity=100, Blast_Score=413, Evalue=1e-117,
Organism=Escherichia coli, GI1790564, Length=181, Percent_Identity=29.8342541436464, Blast_Score=78, Evalue=4e-16,
Organism=Escherichia coli, GI1787897, Length=181, Percent_Identity=28.7292817679558, Blast_Score=78, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004647 [H]

Pfam domain/function: PF05683 Fumerase_C [H]

EC number: =4.2.1.32 [H]

Molecular weight: Translated: 22680; Mature: 22680

Theoretical pI: Translated: 6.62; Mature: 6.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKILTTPIKAEDLQDIRVGDVIYLTGTLVTCRDVCHRRLIELKRPIPYDLNGKAIFHAG
CCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECC
PIVRKNGDKWEMVSVGPTTSMRMESFEREFIEQTGVKLVVGKGGMGPLTEEGCQKFKALH
CEEECCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHE
VIFPAGCAVLAATQVEEIEEVHWTELGMPESLWVCRVKEFGPLIVSIDTHGNNLIAENKK
EECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEEECCCCCEEHHHHH
LFAERRDPIVEEICEHVHYIK
HHHHHCCCHHHHHHHHHCCCC
>Mature Secondary Structure
MKKILTTPIKAEDLQDIRVGDVIYLTGTLVTCRDVCHRRLIELKRPIPYDLNGKAIFHAG
CCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECC
PIVRKNGDKWEMVSVGPTTSMRMESFEREFIEQTGVKLVVGKGGMGPLTEEGCQKFKALH
CEEECCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHE
VIFPAGCAVLAATQVEEIEEVHWTELGMPESLWVCRVKEFGPLIVSIDTHGNNLIAENKK
EECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEEECCCCCEEHHHHH
LFAERRDPIVEEICEHVHYIK
HHHHHCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]