Click here to switch to the map view.

The map label for this gene is ygiF

Identifier: 30064402

GI number: 30064402

Start: 3177452

End: 3178753

Strand: Reverse

Name: ygiF

Synonym: S3300

Alternate gene names: 30064402

Gene position: 3178753-3177452 (Counterclockwise)

Preceding gene: 30064405

Following gene: 30064401

Centisome position: 69.11

GC content: 54.69

Gene sequence:

>1302_bases
ATGGCTCAGGAAATCGAATTAAAGTTTATTGTTAATCACAGTGCCGTTGAGGCGTTGCGTGACCATCTCAATACGCTGGG
CGGCGAGCACCATGACCCCGTGCAGTTGCTGAATATTTACTACGAAACGCCGGATAACTGGCTGCGTAGGCACGATATGG
GCTTACGTATTCGTGGCGAAAACGGTCGCTATGAGATGACCATGAAAGTTGCAGGAAGAGTGACAGGCGGCTTACACCAG
CGCCCGGAATATAACGTGGCGTTGAGCGAACCGACGCTCGACCTGGCGCAGTTACCGACGGAAATCTGGCCGAACGGCGA
ATTGCCTGCCGATCTCGCTTCCCGCGTGCAGTCGCTGTTTAGCACCGATTTTTATCGCGAAAAATGGCTAGTAGAGATCG
ATGGCAGCCGAATTGAAATCGCTCTCGACCAGGGGGAAGTGAAAGCGGGTGAATTTGCTGAGCCTATCTGCGAGCTGGAA
CTGGAGCTGCTTAGCGGCGACACGCGCGCGGTGCTGAAACTGGCGAACCAACTGGTATCGCAAACCGGATTACGCCAGGG
CAGCCTGAGCAAAGCGGCGCGTGGCTATCATCTGGCGCAGGGCAATCCGGCGCGTGAAATCAAACCGACCACCATTTTGC
ATGTTGCGGCAAAAGCCGATGTGGAACAGGGGCTGGAAGCGGCGCTCGAGCTGGTGTTAGCGCAATGGCAGTATCATGAA
GAACTGTGGGTACGCGGCAACGATGCGGCGAAAGAGCAGGTGCTGGCAGCCATTAGCCTAGTCCGTCATACACTGATGCT
GTTCGGTGGCATTGTGCCGCGTAAAGCGAGTACTCACTTACGTGATTTGCTGACTCAATGCGAAGCGACCATCGCTTCTG
CGGTTTCTGCCGTGACGGCGGTCTACTCTACCGAAACGGCAATGGCGAAGCTGGCGTTGACCGAATGGCTGGTAAGCAAA
GCATGGCAGCCGTTTTTAGATGCCAAAGCGCAGGGCAAAATTAGCGACTCCTTCAAACGCTTTGCCGATATCCATCTTTC
CCGCCATGCCGCTGAACTGAAAAGCGTTTTCTGCCAGCCGTTAGGCGATCGCTACCGTGACCAGTTGCCACGCCTGATGC
GTGATATTGACTCAATACTGTTGCTGGCGGGTTACTATGATCCTGTCGTCGCGCAAGCCTGGCTGGAGAACTGGCAGGGG
CTGCGTCACGCTATTGCGACCGGGCAACGCATTGAAATTGAACATTTCCGTAATGAGGCAAACAATCAGGAACCGTTCTG
GTTGCACAGCGGAAAACGTTAA

Upstream 100 bases:

>100_bases
GCATGGCAATTTGGCGCAAAATACTATCTACTGACAAAAAAGATCGCATTAAGTTCGCCGTTCATCGTCACTTATGTGAC
ATAACCGATAAGTAAAGGCC

Downstream 100 bases:

>100_bases
TCAGGCAAGGATAAAATCGCTTATGAAGCCGCTCTCTTCACCGTTACAGCAGTACTGGCAGACCGTTGTTGAGCGGCTGC
CAGAGCTTTTAGCCGAGGAA

Product: hypothetical protein

Products: NA

Alternate protein names: ORFXE [H]

Number of amino acids: Translated: 433; Mature: 432

Protein sequence:

>433_residues
MAQEIELKFIVNHSAVEALRDHLNTLGGEHHDPVQLLNIYYETPDNWLRRHDMGLRIRGENGRYEMTMKVAGRVTGGLHQ
RPEYNVALSEPTLDLAQLPTEIWPNGELPADLASRVQSLFSTDFYREKWLVEIDGSRIEIALDQGEVKAGEFAEPICELE
LELLSGDTRAVLKLANQLVSQTGLRQGSLSKAARGYHLAQGNPAREIKPTTILHVAAKADVEQGLEAALELVLAQWQYHE
ELWVRGNDAAKEQVLAAISLVRHTLMLFGGIVPRKASTHLRDLLTQCEATIASAVSAVTAVYSTETAMAKLALTEWLVSK
AWQPFLDAKAQGKISDSFKRFADIHLSRHAAELKSVFCQPLGDRYRDQLPRLMRDIDSILLLAGYYDPVVAQAWLENWQG
LRHAIATGQRIEIEHFRNEANNQEPFWLHSGKR

Sequences:

>Translated_433_residues
MAQEIELKFIVNHSAVEALRDHLNTLGGEHHDPVQLLNIYYETPDNWLRRHDMGLRIRGENGRYEMTMKVAGRVTGGLHQ
RPEYNVALSEPTLDLAQLPTEIWPNGELPADLASRVQSLFSTDFYREKWLVEIDGSRIEIALDQGEVKAGEFAEPICELE
LELLSGDTRAVLKLANQLVSQTGLRQGSLSKAARGYHLAQGNPAREIKPTTILHVAAKADVEQGLEAALELVLAQWQYHE
ELWVRGNDAAKEQVLAAISLVRHTLMLFGGIVPRKASTHLRDLLTQCEATIASAVSAVTAVYSTETAMAKLALTEWLVSK
AWQPFLDAKAQGKISDSFKRFADIHLSRHAAELKSVFCQPLGDRYRDQLPRLMRDIDSILLLAGYYDPVVAQAWLENWQG
LRHAIATGQRIEIEHFRNEANNQEPFWLHSGKR
>Mature_432_residues
AQEIELKFIVNHSAVEALRDHLNTLGGEHHDPVQLLNIYYETPDNWLRRHDMGLRIRGENGRYEMTMKVAGRVTGGLHQR
PEYNVALSEPTLDLAQLPTEIWPNGELPADLASRVQSLFSTDFYREKWLVEIDGSRIEIALDQGEVKAGEFAEPICELEL
ELLSGDTRAVLKLANQLVSQTGLRQGSLSKAARGYHLAQGNPAREIKPTTILHVAAKADVEQGLEAALELVLAQWQYHEE
LWVRGNDAAKEQVLAAISLVRHTLMLFGGIVPRKASTHLRDLLTQCEATIASAVSAVTAVYSTETAMAKLALTEWLVSKA
WQPFLDAKAQGKISDSFKRFADIHLSRHAAELKSVFCQPLGDRYRDQLPRLMRDIDSILLLAGYYDPVVAQAWLENWQGL
RHAIATGQRIEIEHFRNEANNQEPFWLHSGKR

Specific function: Unknown

COG id: COG3025

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1598 [H]

Homologues:

Organism=Escherichia coli, GI1789434, Length=433, Percent_Identity=97.9214780600462, Blast_Score=855, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008172
- InterPro:   IPR004206 [H]

Pfam domain/function: PF01928 CYTH [H]

EC number: NA

Molecular weight: Translated: 48670; Mature: 48539

Theoretical pI: Translated: 6.20; Mature: 6.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQEIELKFIVNHSAVEALRDHLNTLGGEHHDPVQLLNIYYETPDNWLRRHDMGLRIRGE
CCCEEEEEEEECHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHCCCCEEEECC
NGRYEMTMKVAGRVTGGLHQRPEYNVALSEPTLDLAQLPTEIWPNGELPADLASRVQSLF
CCCEEEEEEEHHHHCCCCCCCCCCCEEECCCCCHHHHCCHHHCCCCCCCHHHHHHHHHHH
STDFYREKWLVEIDGSRIEIALDQGEVKAGEFAEPICELELELLSGDTRAVLKLANQLVS
HHHHHHCCEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
QTGLRQGSLSKAARGYHLAQGNPAREIKPTTILHVAAKADVEQGLEAALELVLAQWQYHE
HHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
ELWVRGNDAAKEQVLAAISLVRHTLMLFGGIVPRKASTHLRDLLTQCEATIASAVSAVTA
HHEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
VYSTETAMAKLALTEWLVSKAWQPFLDAKAQGKISDSFKRFADIHLSRHAAELKSVFCQP
HHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGDRYRDQLPRLMRDIDSILLLAGYYDPVVAQAWLENWQGLRHAIATGQRIEIEHFRNEA
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHCC
NNQEPFWLHSGKR
CCCCCEEECCCCC
>Mature Secondary Structure 
AQEIELKFIVNHSAVEALRDHLNTLGGEHHDPVQLLNIYYETPDNWLRRHDMGLRIRGE
CCEEEEEEEECHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHCCCCEEEECC
NGRYEMTMKVAGRVTGGLHQRPEYNVALSEPTLDLAQLPTEIWPNGELPADLASRVQSLF
CCCEEEEEEEHHHHCCCCCCCCCCCEEECCCCCHHHHCCHHHCCCCCCCHHHHHHHHHHH
STDFYREKWLVEIDGSRIEIALDQGEVKAGEFAEPICELELELLSGDTRAVLKLANQLVS
HHHHHHCCEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
QTGLRQGSLSKAARGYHLAQGNPAREIKPTTILHVAAKADVEQGLEAALELVLAQWQYHE
HHCCCCCCHHHHHCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
ELWVRGNDAAKEQVLAAISLVRHTLMLFGGIVPRKASTHLRDLLTQCEATIASAVSAVTA
HHEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
VYSTETAMAKLALTEWLVSKAWQPFLDAKAQGKISDSFKRFADIHLSRHAAELKSVFCQP
HHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGDRYRDQLPRLMRDIDSILLLAGYYDPVVAQAWLENWQGLRHAIATGQRIEIEHFRNEA
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHCC
NNQEPFWLHSGKR
CCCCCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8412694; 9278503 [H]