| Definition | Shigella flexneri 2a str. 2457T, complete genome. |
|---|---|
| Accession | NC_004741 |
| Length | 4,599,354 |
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The map label for this gene is ygfF
Identifier: 30064213
GI number: 30064213
Start: 2971161
End: 2971904
Strand: Reverse
Name: ygfF
Synonym: S3087
Alternate gene names: 30064213
Gene position: 2971904-2971161 (Counterclockwise)
Preceding gene: 30064214
Following gene: 30064211
Centisome position: 64.62
GC content: 54.97
Gene sequence:
>744_bases ATGGCTATAGCACTTGTGACCGGTGGCAGTCGCGGCATCGGGCGGGCAACTGCATTACTGTTGGCGCAAGAAGGGTATAC GGTGGCGGTTAATTATCAGCAAAACCTCCACGCGGCGCAGGAAGTGATGAACTTAATAATGCAAGCCGGTGGCAAAGCAT TCGTGCTCCAGGCGGATATCAGCGACGAAAACCAGGTCGTTGCGATGTTTACAGCAATCGATCAGCACGATGAACCGCTA GCAGCGCTGGTCAATAACGCCGGGATCTTGTTTACCCAGTGCACCGTTGAAAACCTTACCGCAGAGCGAATCAACCGAGT ACTTTCCACCAACGTGACGGGATATTTTCTCTGCTGCCGCGAGGCGGTAAAACGCATGGCGCTTAAAAATGGTGGCAGTG GCGGCGCTATCGTCAATGTCTCTTCGGTGGCCTCACGGTTGGGTTCGCCAGGGGAATATGTTGATTACGCGGCATCGAAA GGGGCGATTGATTCGTTAACCACCGGACTATCGCTGGAAGTCGCCGCGCAGGGGATCCGCGTTAACTGCGTGCGGCCAGG GTTTATTTATACCGAAATGCACGCCAGCGGCGGCGAGCCTGGACGCGTCGATCGCGTTAAGTCGAACATCCCCATGCAGC GTGGTGGACAGGCAGAAGAGGTCGCGCAGGCCATTGTCTGGCTACTAAGTGATAAAGCCTCTTACGTCACGGGAAGTTTT ATCGATTTGGCGGGCGGGAAATAA
Upstream 100 bases:
>100_bases GAAAGGGCGAGGGGGAAAAGCGTGCCAACATTGAAGATTGAGCCAGTTTGTTAGCAATCTCAAAGATACGTCAACGAATT AATTTTTCTCGGAAAAACAA
Downstream 100 bases:
>100_bases AACAGGGAAGTTGTCTGACCGGATGCAACAAGTATTGCATCCGGTACTTCATCGACTTAAAGCTTCTCGCCGTTGCTGGC AATCACCTCTTTGTACCAGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 247; Mature: 246
Protein sequence:
>247_residues MAIALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVMNLIMQAGGKAFVLQADISDENQVVAMFTAIDQHDEPL AALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKNGGSGGAIVNVSSVASRLGSPGEYVDYAASK GAIDSLTTGLSLEVAAQGIRVNCVRPGFIYTEMHASGGEPGRVDRVKSNIPMQRGGQAEEVAQAIVWLLSDKASYVTGSF IDLAGGK
Sequences:
>Translated_247_residues MAIALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVMNLIMQAGGKAFVLQADISDENQVVAMFTAIDQHDEPL AALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKNGGSGGAIVNVSSVASRLGSPGEYVDYAASK GAIDSLTTGLSLEVAAQGIRVNCVRPGFIYTEMHASGGEPGRVDRVKSNIPMQRGGQAEEVAQAIVWLLSDKASYVTGSF IDLAGGK >Mature_246_residues AIALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVMNLIMQAGGKAFVLQADISDENQVVAMFTAIDQHDEPLA ALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKNGGSGGAIVNVSSVASRLGSPGEYVDYAASKG AIDSLTTGLSLEVAAQGIRVNCVRPGFIYTEMHASGGEPGRVDRVKSNIPMQRGGQAEEVAQAIVWLLSDKASYVTGSFI DLAGGK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI40254992, Length=245, Percent_Identity=37.5510204081633, Blast_Score=135, Evalue=4e-32, Organism=Homo sapiens, GI15277342, Length=254, Percent_Identity=33.8582677165354, Blast_Score=118, Evalue=6e-27, Organism=Homo sapiens, GI19923817, Length=253, Percent_Identity=33.596837944664, Blast_Score=107, Evalue=1e-23, Organism=Homo sapiens, GI32483357, Length=249, Percent_Identity=32.9317269076305, Blast_Score=98, Evalue=5e-21, Organism=Homo sapiens, GI7705925, Length=244, Percent_Identity=31.5573770491803, Blast_Score=92, Evalue=5e-19, Organism=Homo sapiens, GI109715829, Length=247, Percent_Identity=28.7449392712551, Blast_Score=82, Evalue=6e-16, Organism=Homo sapiens, GI59889578, Length=201, Percent_Identity=28.8557213930348, Blast_Score=76, Evalue=2e-14, Organism=Homo sapiens, GI5031737, Length=258, Percent_Identity=31.7829457364341, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI126723750, Length=251, Percent_Identity=29.4820717131474, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI10190704, Length=251, Percent_Identity=28.2868525896414, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI31542939, Length=198, Percent_Identity=32.8282828282828, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI66933014, Length=175, Percent_Identity=32, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI126723191, Length=186, Percent_Identity=33.3333333333333, Blast_Score=65, Evalue=4e-11, Organism=Homo sapiens, GI4758504, Length=253, Percent_Identity=28.4584980237154, Blast_Score=65, Evalue=4e-11, Organism=Escherichia coli, GI2367175, Length=247, Percent_Identity=99.1902834008097, Blast_Score=500, Evalue=1e-143, Organism=Escherichia coli, GI1789378, Length=246, Percent_Identity=35.3658536585366, Blast_Score=132, Evalue=2e-32, Organism=Escherichia coli, GI1788459, Length=244, Percent_Identity=30.327868852459, Blast_Score=122, Evalue=2e-29, Organism=Escherichia coli, GI1787335, Length=244, Percent_Identity=33.6065573770492, Blast_Score=113, Evalue=1e-26, Organism=Escherichia coli, GI1790717, Length=243, Percent_Identity=29.2181069958848, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI2367365, Length=242, Percent_Identity=31.8181818181818, Blast_Score=91, Evalue=9e-20, Organism=Escherichia coli, GI1786812, Length=254, Percent_Identity=32.2834645669291, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1789057, Length=257, Percent_Identity=29.9610894941634, Blast_Score=88, Evalue=6e-19, Organism=Escherichia coli, GI1787905, Length=243, Percent_Identity=30.4526748971193, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI87082160, Length=247, Percent_Identity=29.1497975708502, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI87082100, Length=247, Percent_Identity=29.1497975708502, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1789208, Length=246, Percent_Identity=28.0487804878049, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI1787526, Length=250, Percent_Identity=27.6, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1787891, Length=244, Percent_Identity=26.2295081967213, Blast_Score=62, Evalue=3e-11, Organism=Caenorhabditis elegans, GI25147288, Length=244, Percent_Identity=34.0163934426229, Blast_Score=114, Evalue=7e-26, Organism=Caenorhabditis elegans, GI71994604, Length=255, Percent_Identity=32.5490196078431, Blast_Score=113, Evalue=7e-26, Organism=Caenorhabditis elegans, GI17555706, Length=248, Percent_Identity=33.8709677419355, Blast_Score=113, Evalue=9e-26, Organism=Caenorhabditis elegans, GI71994600, Length=256, Percent_Identity=30.46875, Blast_Score=108, Evalue=3e-24, Organism=Caenorhabditis elegans, GI115534694, Length=246, Percent_Identity=32.1138211382114, Blast_Score=106, Evalue=1e-23, Organism=Caenorhabditis elegans, GI17559104, Length=270, Percent_Identity=30.3703703703704, Blast_Score=96, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17536025, Length=254, Percent_Identity=31.8897637795276, Blast_Score=94, Evalue=8e-20, Organism=Caenorhabditis elegans, GI17536651, Length=250, Percent_Identity=31.6, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17562910, Length=271, Percent_Identity=32.4723247232472, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI72000259, Length=257, Percent_Identity=32.6848249027237, Blast_Score=88, Evalue=4e-18, Organism=Caenorhabditis elegans, GI17565030, Length=257, Percent_Identity=30.3501945525292, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI17562906, Length=259, Percent_Identity=29.3436293436293, Blast_Score=87, Evalue=9e-18, Organism=Caenorhabditis elegans, GI193204405, Length=260, Percent_Identity=30, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17531453, Length=260, Percent_Identity=31.5384615384615, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17538480, Length=259, Percent_Identity=30.8880308880309, Blast_Score=86, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17538486, Length=266, Percent_Identity=27.8195488721804, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17544670, Length=262, Percent_Identity=28.6259541984733, Blast_Score=84, Evalue=8e-17, Organism=Caenorhabditis elegans, GI17562904, Length=266, Percent_Identity=29.3233082706767, Blast_Score=84, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17538182, Length=257, Percent_Identity=31.1284046692607, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17563726, Length=261, Percent_Identity=30.6513409961686, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17560676, Length=254, Percent_Identity=31.496062992126, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17560150, Length=262, Percent_Identity=29.3893129770992, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17551412, Length=267, Percent_Identity=31.0861423220974, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17562990, Length=262, Percent_Identity=30.1526717557252, Blast_Score=77, Evalue=7e-15, Organism=Caenorhabditis elegans, GI17561402, Length=253, Percent_Identity=30.8300395256917, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17561272, Length=246, Percent_Identity=26.8292682926829, Blast_Score=75, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17560332, Length=265, Percent_Identity=30.188679245283, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17564282, Length=247, Percent_Identity=28.3400809716599, Blast_Score=74, Evalue=9e-14, Organism=Caenorhabditis elegans, GI17560220, Length=263, Percent_Identity=31.1787072243346, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17562908, Length=259, Percent_Identity=27.7992277992278, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17508895, Length=240, Percent_Identity=25.8333333333333, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI72001658, Length=220, Percent_Identity=30, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17559964, Length=205, Percent_Identity=28.2926829268293, Blast_Score=64, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=239, Percent_Identity=31.3807531380753, Blast_Score=81, Evalue=2e-16, Organism=Saccharomyces cerevisiae, GI6324126, Length=252, Percent_Identity=26.5873015873016, Blast_Score=72, Evalue=6e-14, Organism=Drosophila melanogaster, GI23397609, Length=257, Percent_Identity=36.9649805447471, Blast_Score=124, Evalue=7e-29, Organism=Drosophila melanogaster, GI21357041, Length=255, Percent_Identity=36.4705882352941, Blast_Score=122, Evalue=3e-28, Organism=Drosophila melanogaster, GI24644339, Length=256, Percent_Identity=35.15625, Blast_Score=119, Evalue=2e-27, Organism=Drosophila melanogaster, GI28571526, Length=254, Percent_Identity=34.251968503937, Blast_Score=119, Evalue=2e-27, Organism=Drosophila melanogaster, GI24639444, Length=246, Percent_Identity=34.9593495934959, Blast_Score=114, Evalue=4e-26, Organism=Drosophila melanogaster, GI24643142, Length=245, Percent_Identity=34.2857142857143, Blast_Score=103, Evalue=1e-22, Organism=Drosophila melanogaster, GI24644337, Length=214, Percent_Identity=33.1775700934579, Blast_Score=87, Evalue=1e-17, Organism=Drosophila melanogaster, GI21355319, Length=253, Percent_Identity=30.4347826086957, Blast_Score=82, Evalue=3e-16, Organism=Drosophila melanogaster, GI17737361, Length=238, Percent_Identity=33.1932773109244, Blast_Score=77, Evalue=9e-15, Organism=Drosophila melanogaster, GI24641232, Length=237, Percent_Identity=29.535864978903, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI116007236, Length=240, Percent_Identity=27.9166666666667, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI21356301, Length=187, Percent_Identity=30.4812834224599, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI281364892, Length=198, Percent_Identity=30.3030303030303, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI24648944, Length=232, Percent_Identity=28.8793103448276, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI24648693, Length=238, Percent_Identity=26.890756302521, Blast_Score=65, Evalue=6e-11, Organism=Drosophila melanogaster, GI21355889, Length=238, Percent_Identity=26.890756302521, Blast_Score=65, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 25955; Mature: 25824
Theoretical pI: Translated: 5.73; Mature: 5.73
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVMNLIMQAGGKAFVLQADI CEEEEEECCCCCCCHHEEEEEEECCCEEEEECHHHHHHHHHHHHHHHHCCCCEEEEEECC SDENQVVAMFTAIDQHDEPLAALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCR CCCCCEEEEEEECCCCCCHHHHHHCCCCEEEEEEEHHHHHHHHHHHHHHCCCCHHHHHHH EAVKRMALKNGGSGGAIVNVSSVASRLGSPGEYVDYAASKGAIDSLTTGLSLEVAAQGIR HHHHHHHHHCCCCCCEEEEHHHHHHHHCCCCCHHHHHCCCCCHHHHHCCCEEEEEECCEE VNCVRPGFIYTEMHASGGEPGRVDRVKSNIPMQRGGQAEEVAQAIVWLLSDKASYVTGSF EEEECCCEEEEEEECCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCE IDLAGGK EECCCCC >Mature Secondary Structure AIALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVMNLIMQAGGKAFVLQADI EEEEEECCCCCCCHHEEEEEEECCCEEEEECHHHHHHHHHHHHHHHHCCCCEEEEEECC SDENQVVAMFTAIDQHDEPLAALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCR CCCCCEEEEEEECCCCCCHHHHHHCCCCEEEEEEEHHHHHHHHHHHHHHCCCCHHHHHHH EAVKRMALKNGGSGGAIVNVSSVASRLGSPGEYVDYAASKGAIDSLTTGLSLEVAAQGIR HHHHHHHHHCCCCCCEEEEHHHHHHHHCCCCCHHHHHCCCCCHHHHHCCCEEEEEECCEE VNCVRPGFIYTEMHASGGEPGRVDRVKSNIPMQRGGQAEEVAQAIVWLLSDKASYVTGSF EEEECCCEEEEEEECCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCE IDLAGGK EECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503; 7764507 [H]