Click here to switch to the map view.

The map label for this gene is ygdI [H]

Identifier: 30064154

GI number: 30064154

Start: 2898044

End: 2898274

Strand: Reverse

Name: ygdI [H]

Synonym: S3018

Alternate gene names: 30064154

Gene position: 2898274-2898044 (Counterclockwise)

Preceding gene: 30064157

Following gene: 30064153

Centisome position: 63.01

GC content: 45.89

Gene sequence:

>231_bases
ATGATGAAAAAGACTGCCGCAATTATTTCTGCCTGTATGCTGACTTTTGCCCTGAGCGCCTGTTCCGGTTCGAACTATGT
GATGCACACCAATGACGGACGTACCATCGTCTCTGACGGCAAACCACAGACTGATAACGATATCGGTATGATTTCGTATA
AAGACGCTAATGGCAACAAACAGCAGATCAACCGTACTGACGTGAAAGAGATGGTCGAACTGGAACAGTAA

Upstream 100 bases:

>100_bases
TGGCGAAGCCGCGTAAGTAACATATGCTGAATAGTGTTAGGCGTTAATTTTAGCCTGTTAATCAATACTATTAAGATTTA
TTAATCGTTTTAAGGAGAAG

Downstream 100 bases:

>100_bases
TTCGCGATCGCAAGGTAAAAAAAAGCACCGCAATTAGGCGGTGCTACATTAATCACTATGGACAGACAGGGTAAATGTAC
AGGAAGTGAAAAAAGGTAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 76; Mature: 76

Protein sequence:

>76_residues
MMKKTAAIISACMLTFALSACSGSNYVMHTNDGRTIVSDGKPQTDNDIGMISYKDANGNKQQINRTDVKEMVELEQ

Sequences:

>Translated_76_residues
MMKKTAAIISACMLTFALSACSGSNYVMHTNDGRTIVSDGKPQTDNDIGMISYKDANGNKQQINRTDVKEMVELEQ
>Mature_76_residues
MMKKTAAIISACMLTFALSACSGSNYVMHTNDGRTIVSDGKPQTDNDIGMISYKDANGNKQQINRTDVKEMVELEQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ygdR [H]

Homologues:

Organism=Escherichia coli, GI87082162, Length=75, Percent_Identity=97.3333333333333, Blast_Score=153, Evalue=2e-39,
Organism=Escherichia coli, GI1789198, Length=72, Percent_Identity=58.3333333333333, Blast_Score=89, Evalue=5e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010305 [H]

Pfam domain/function: PF06004 DUF903 [H]

EC number: NA

Molecular weight: Translated: 8332; Mature: 8332

Theoretical pI: Translated: 5.75; Mature: 5.75

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
7.9 %Met     (Translated Protein)
10.5 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
7.9 %Met     (Mature Protein)
10.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKKTAAIISACMLTFALSACSGSNYVMHTNDGRTIVSDGKPQTDNDIGMISYKDANGNK
CCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEECCCCCCCCCCEEEEEECCCCCH
QQINRTDVKEMVELEQ
HHCCHHHHHHHHHCCC
>Mature Secondary Structure
MMKKTAAIISACMLTFALSACSGSNYVMHTNDGRTIVSDGKPQTDNDIGMISYKDANGNK
CCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEECCCCCCCCCCEEEEEECCCCCH
QQINRTDVKEMVELEQ
HHCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]