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The map label for this gene is ygcN

Identifier: 30064115

GI number: 30064115

Start: 2851354

End: 2852655

Strand: Direct

Name: ygcN

Synonym: S2975

Alternate gene names: 30064115

Gene position: 2851354-2852655 (Clockwise)

Preceding gene: 30064114

Following gene: 30064116

Centisome position: 61.99

GC content: 54.84

Gene sequence:

>1302_bases
GTGTTGTGTTCTGGATATCTGGGGCATGACATGGAAGACGACTGCGACATTATTATTATTGGTGCCGGTATTGCAGGCAC
CGCTTGCGCGTTACGCTGCGCGCGAGCGGATTTATCCGTTTTGTTACTCGAACGCGCTGAAATCCCCGGCAGCAAAAATC
TTTCCGGCAGGCGGTTATATACCCATGCACTCGCGGAACTCCTCCCGCAATTTCATCTGACCGCGCCTCTTGAACGACGC
ATCACTCACGAAAGCCTTTCCCTGTTAACGCCGGATGGCGCAACGACGTTTTCCAGCTTACAGCCCGGCGGTGAATCCTG
GAGTGTATTACGTGCACGGTTCGATCCGTGGCTGGTTGCCGAAGCCGAAAAAGAAGGTGTCGAATGCATCCCCGGAGCGA
CGGTGGATGCACTGTATGAAGAAAACGGCAGAGTCTGTGGCGTTATTTGTGGTGACGATATTCTCCGCGCCCGTTATGTG
GTGCTGGCAGAAGGTGCCAACAGCGTCCTGGCTGAACGTCACGGGTTAGTGACTCGTCCTGCTGGCGAAGCGATGGCGTT
GGGGATCAAAGAAGTGCTGTCGCTGGAAACATCCGCTATTGAAGAACGTTTTCATCTGGAGAATAACGAAGGCGCAGCGT
TGCTGTTCAGCGGCGGAATCTGTGATGACTTACCCGGCGGCGCATTTCTTTATACTAATCAACAAACGCTCTCGTTAGGG
ATTGTTTGCCCGCTCTCTTCCCTTACGCAAAGTCGTGTTCCGGCAAGCGAGCTGCTGACTCGCTTTAAAGCGCATCCGGC
AGTGCGCACGCTTATCAAAAACACGGAATCACTGGAGTATGGTGCGCATCTGGTGCCAGAAGGTGGCTTGCACAGTATGC
CGGTGCAATACGCCGGTAACGGCTGGCTGCTGGTGGGCGATGCGTTGCGCAGTTGCGTCAATACCGGAATTTCCGTGCGC
GGCATGGATATGGCGCTGACTGGCGCACAGGCGGCGGCACAAACGCTAATAAGCGCCTGCCAGCACCGCGAGCCGCAAAA
TCTGTTTGCGCTTTATCATCACAACGTAGAGCGCAGCCTGCTATGGGATGTTCTACAACGTTATCAGCATGTTCCGGCGC
TTTTGCAACGCCCTGGCAGGTATCGGGCGTGGCCTGCGTTAATGCAGGATATTTCCCGCGATTTATGGGATCAGGGTGAT
AAACCTGTTCCACCGCTGCGCCAGTTATTCTGGCATCATTTACGTCGTCATGGCCTGTGGCATCTGGCGGGCGATGTTAT
CAGGAGTCTGCGATGTCTGTAG

Upstream 100 bases:

>100_bases
CGGTGATGGTAAAAGAAACCTGCACCGCAGGGTGTATCTATCGCGGCGAATGATAAGAGTGTGTCGGCGGTCAATTTCCC
TTTAGTAACGCTATGTTAGG

Downstream 100 bases:

>100_bases
CCCGTAATCTCTGGCGCGTTGCTGATGCGCCGCACATTGTTCCGGCTGACTCCGTTGAGCGTCAGATGGTACAACGGTTG
ATTAACGCCTGTCCGGTAGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 433; Mature: 433

Protein sequence:

>433_residues
MLCSGYLGHDMEDDCDIIIIGAGIAGTACALRCARADLSVLLLERAEIPGSKNLSGRRLYTHALAELLPQFHLTAPLERR
ITHESLSLLTPDGATTFSSLQPGGESWSVLRARFDPWLVAEAEKEGVECIPGATVDALYEENGRVCGVICGDDILRARYV
VLAEGANSVLAERHGLVTRPAGEAMALGIKEVLSLETSAIEERFHLENNEGAALLFSGGICDDLPGGAFLYTNQQTLSLG
IVCPLSSLTQSRVPASELLTRFKAHPAVRTLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLVGDALRSCVNTGISVR
GMDMALTGAQAAAQTLISACQHREPQNLFALYHHNVERSLLWDVLQRYQHVPALLQRPGRYRAWPALMQDISRDLWDQGD
KPVPPLRQLFWHHLRRHGLWHLAGDVIRSLRCL

Sequences:

>Translated_433_residues
MLCSGYLGHDMEDDCDIIIIGAGIAGTACALRCARADLSVLLLERAEIPGSKNLSGRRLYTHALAELLPQFHLTAPLERR
ITHESLSLLTPDGATTFSSLQPGGESWSVLRARFDPWLVAEAEKEGVECIPGATVDALYEENGRVCGVICGDDILRARYV
VLAEGANSVLAERHGLVTRPAGEAMALGIKEVLSLETSAIEERFHLENNEGAALLFSGGICDDLPGGAFLYTNQQTLSLG
IVCPLSSLTQSRVPASELLTRFKAHPAVRTLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLVGDALRSCVNTGISVR
GMDMALTGAQAAAQTLISACQHREPQNLFALYHHNVERSLLWDVLQRYQHVPALLQRPGRYRAWPALMQDISRDLWDQGD
KPVPPLRQLFWHHLRRHGLWHLAGDVIRSLRCL
>Mature_433_residues
MLCSGYLGHDMEDDCDIIIIGAGIAGTACALRCARADLSVLLLERAEIPGSKNLSGRRLYTHALAELLPQFHLTAPLERR
ITHESLSLLTPDGATTFSSLQPGGESWSVLRARFDPWLVAEAEKEGVECIPGATVDALYEENGRVCGVICGDDILRARYV
VLAEGANSVLAERHGLVTRPAGEAMALGIKEVLSLETSAIEERFHLENNEGAALLFSGGICDDLPGGAFLYTNQQTLSLG
IVCPLSSLTQSRVPASELLTRFKAHPAVRTLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLVGDALRSCVNTGISVR
GMDMALTGAQAAAQTLISACQHREPQNLFALYHHNVERSLLWDVLQRYQHVPALLQRPGRYRAWPALMQDISRDLWDQGD
KPVPPLRQLFWHHLRRHGLWHLAGDVIRSLRCL

Specific function: Probably accepts electrons from ygcQ/ygcR and reduces a quinone [H]

COG id: COG0644

COG function: function code C; Dehydrogenases (flavoproteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ETF-QO/fixC family [H]

Homologues:

Organism=Homo sapiens, GI119703746, Length=410, Percent_Identity=25.609756097561, Blast_Score=86, Evalue=5e-17,
Organism=Escherichia coli, GI87082155, Length=423, Percent_Identity=98.1087470449173, Blast_Score=839, Evalue=0.0,
Organism=Escherichia coli, GI1787991, Length=428, Percent_Identity=41.8224299065421, Blast_Score=333, Evalue=2e-92,
Organism=Escherichia coli, GI1786227, Length=428, Percent_Identity=40.1869158878505, Blast_Score=319, Evalue=2e-88,
Organism=Caenorhabditis elegans, GI25144720, Length=366, Percent_Identity=26.775956284153, Blast_Score=100, Evalue=1e-21,
Organism=Saccharomyces cerevisiae, GI6324932, Length=367, Percent_Identity=26.9754768392371, Blast_Score=89, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24652256, Length=415, Percent_Identity=26.2650602409639, Blast_Score=99, Evalue=4e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076
- InterPro:   IPR003042 [H]

Pfam domain/function: PF01266 DAO [H]

EC number: 1.5.5.-

Molecular weight: Translated: 47419; Mature: 47419

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLCSGYLGHDMEDDCDIIIIGAGIAGTACALRCARADLSVLLLERAEIPGSKNLSGRRLY
CCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCHHH
THALAELLPQFHLTAPLERRITHESLSLLTPDGATTFSSLQPGGESWSVLRARFDPWLVA
HHHHHHHHHHHCCCCCHHHHHHHHHHHEECCCCCCHHHCCCCCCCCHHHHHHCCCCEEEE
EAEKEGVECIPGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVLAERHGLVTRP
ECCCCCCEECCCCHHHHHHHCCCCEEEEEECCHHHHHEEEEEECCCHHHHHHHCCCEECC
AGEAMALGIKEVLSLETSAIEERFHLENNEGAALLFSGGICDDLPGGAFLYTNQQTLSLG
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCEEEEECCCEEEEE
IVCPLSSLTQSRVPASELLTRFKAHPAVRTLIKNTESLEYGAHLVPEGGLHSMPVQYAGN
EECCHHHHHHHCCCHHHHHHHHHCCHHHHHHHHCCCCCCCCCEECCCCCCCCCCEEECCC
GWLLVGDALRSCVNTGISVRGMDMALTGAQAAAQTLISACQHREPQNLFALYHHNVERSL
CEEEEHHHHHHHHHCCCEEECCCEEECCHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHH
LWDVLQRYQHVPALLQRPGRYRAWPALMQDISRDLWDQGDKPVPPLRQLFWHHLRRHGLW
HHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHH
HLAGDVIRSLRCL
HHHHHHHHHHHCC
>Mature Secondary Structure
MLCSGYLGHDMEDDCDIIIIGAGIAGTACALRCARADLSVLLLERAEIPGSKNLSGRRLY
CCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCHHH
THALAELLPQFHLTAPLERRITHESLSLLTPDGATTFSSLQPGGESWSVLRARFDPWLVA
HHHHHHHHHHHCCCCCHHHHHHHHHHHEECCCCCCHHHCCCCCCCCHHHHHHCCCCEEEE
EAEKEGVECIPGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVLAERHGLVTRP
ECCCCCCEECCCCHHHHHHHCCCCEEEEEECCHHHHHEEEEEECCCHHHHHHHCCCEECC
AGEAMALGIKEVLSLETSAIEERFHLENNEGAALLFSGGICDDLPGGAFLYTNQQTLSLG
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCEEEEECCCEEEEE
IVCPLSSLTQSRVPASELLTRFKAHPAVRTLIKNTESLEYGAHLVPEGGLHSMPVQYAGN
EECCHHHHHHHCCCHHHHHHHHHCCHHHHHHHHCCCCCCCCCEECCCCCCCCCCEEECCC
GWLLVGDALRSCVNTGISVRGMDMALTGAQAAAQTLISACQHREPQNLFALYHHNVERSL
CEEEEHHHHHHHHHCCCEEECCCEEECCHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHH
LWDVLQRYQHVPALLQRPGRYRAWPALMQDISRDLWDQGDKPVPPLRQLFWHHLRRHGLW
HHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHH
HLAGDVIRSLRCL
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]