Click here to switch to the map view.

The map label for this gene is yclC

Identifier: 30064096

GI number: 30064096

Start: 2831184

End: 2832134

Strand: Reverse

Name: yclC

Synonym: S2954

Alternate gene names: 30064096

Gene position: 2832134-2831184 (Counterclockwise)

Preceding gene: 30064097

Following gene: 30064094

Centisome position: 61.58

GC content: 56.57

Gene sequence:

>951_bases
ATGGCATTTGATGATTTACGCAGCTTTTTACAGGCGCTTGATGACCACGGCCAGTTACTGAAAATCAGCGAAGAAGTGAA
CGCTGAGCCGGATCTGGCAGCAGCAGCTAACGCCACCGGGCGTATCGGCGACGGCGCGCCCGCGCTGTGGTTTGATAATA
TTCGCGGCTTTACCGATGCCCGCGTGGCGATGAATACCATCGGTTCCTGGCAGAACCACGCGATTTCCCTTGGCCTGCCA
CCAAACACCCCGGTCAAAAAGCAGATTGATGAGTTTATCCGCCGCTGGGATAACTTCCCGATTGCCCCGGAGCGCCGCGC
CAATCCAGCCTGGGCGCAGAACACCGTCGATGGCGAAGAGATCAACCTGTTCGATATTCTGCCGCTGTTTCGCCTGAATG
ATGGCGATGGCGGTTTCTATCTCGACAAAGCGTGCGTGGTTTCCCGCGATCCGCTCGACCCGGATAACTTCGGCAAGCAG
AACGTCGGCATCTACCGCATGGAAGTGAAGGGCAAGCGTAAGCTCGGCCTGCAACCGGTGCCGATGCACGATATCGCCCT
GCATCTGCATAAAGCAGAAGAGCGCGGTGAAGATCTGCCGATTGCGATCACGCTCGGTAACGATCCGATCATCACGCTGA
TGGGGGCCACGCCGCTGAAATACGATCAGTCTGAGTATGAAATGGCAGGCGCGCTGCGTGAAAGCCCGTACCCGATCGCC
ACCGCTCCGCTGACCGGTTTTGATGTGCCGTGGGGTTCAGAAGTGATCCTCGAAGGGGTTATCGAAAGCCGTAAACGCGA
AATCGAAGGGCCGTTCGGTGAGTTTACCGGGCACTACTCCGGTGGGCGCAACATGACCGTGGTGCGCATCGATAAAGTCT
CTTATCGCAGCAAACCGATTTTCGAATCACTCTATCTCGGTATGCCGTGGACCGAAATCGACTACCTATGA

Upstream 100 bases:

>100_bases
TGGTAGCCCGCGTGCTGGATCAATTTGGCCTCGAACATCCCCACGCCAGGCGCTGGCAAGGATTGCCGCAGGCCCGGAAT
TTTTCTCAGGAGAATGAATA

Downstream 100 bases:

>100_bases
CTAGGTAATTTATTCAAGATAACCGGGAAGAGATTAAAAAAGACGGGAATAGATTGGAATCAACAAGTTAGGAACTCAAG
GTTTTCAAGATAAAGCGAGT

Product: putative 4-hydroxybenzoate decarboxylase

Products: 2-octaprenylphenol; CO2 [C]

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 315

Protein sequence:

>316_residues
MAFDDLRSFLQALDDHGQLLKISEEVNAEPDLAAAANATGRIGDGAPALWFDNIRGFTDARVAMNTIGSWQNHAISLGLP
PNTPVKKQIDEFIRRWDNFPIAPERRANPAWAQNTVDGEEINLFDILPLFRLNDGDGGFYLDKACVVSRDPLDPDNFGKQ
NVGIYRMEVKGKRKLGLQPVPMHDIALHLHKAEERGEDLPIAITLGNDPIITLMGATPLKYDQSEYEMAGALRESPYPIA
TAPLTGFDVPWGSEVILEGVIESRKREIEGPFGEFTGHYSGGRNMTVVRIDKVSYRSKPIFESLYLGMPWTEIDYL

Sequences:

>Translated_316_residues
MAFDDLRSFLQALDDHGQLLKISEEVNAEPDLAAAANATGRIGDGAPALWFDNIRGFTDARVAMNTIGSWQNHAISLGLP
PNTPVKKQIDEFIRRWDNFPIAPERRANPAWAQNTVDGEEINLFDILPLFRLNDGDGGFYLDKACVVSRDPLDPDNFGKQ
NVGIYRMEVKGKRKLGLQPVPMHDIALHLHKAEERGEDLPIAITLGNDPIITLMGATPLKYDQSEYEMAGALRESPYPIA
TAPLTGFDVPWGSEVILEGVIESRKREIEGPFGEFTGHYSGGRNMTVVRIDKVSYRSKPIFESLYLGMPWTEIDYL
>Mature_315_residues
AFDDLRSFLQALDDHGQLLKISEEVNAEPDLAAAANATGRIGDGAPALWFDNIRGFTDARVAMNTIGSWQNHAISLGLPP
NTPVKKQIDEFIRRWDNFPIAPERRANPAWAQNTVDGEEINLFDILPLFRLNDGDGGFYLDKACVVSRDPLDPDNFGKQN
VGIYRMEVKGKRKLGLQPVPMHDIALHLHKAEERGEDLPIAITLGNDPIITLMGATPLKYDQSEYEMAGALRESPYPIAT
APLTGFDVPWGSEVILEGVIESRKREIEGPFGEFTGHYSGGRNMTVVRIDKVSYRSKPIFESLYLGMPWTEIDYL

Specific function: Unknown

COG id: COG0043

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiD family [H]

Homologues:

Organism=Escherichia coli, GI1790277, Length=330, Percent_Identity=28.1818181818182, Blast_Score=121, Evalue=5e-29,
Organism=Saccharomyces cerevisiae, GI6320748, Length=315, Percent_Identity=27.6190476190476, Blast_Score=83, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002830
- InterPro:   IPR009002 [H]

Pfam domain/function: PF01977 UbiD [H]

EC number: NA

Molecular weight: Translated: 35225; Mature: 35094

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFDDLRSFLQALDDHGQLLKISEEVNAEPDLAAAANATGRIGDGAPALWFDNIRGFTDA
CCHHHHHHHHHHHCCCCCEEEEHHHCCCCCCHHHHCCCCCCCCCCCCEEEECCCCCCCHH
RVAMNTIGSWQNHAISLGLPPNTPVKKQIDEFIRRWDNFPIAPERRANPAWAQNTVDGEE
HHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCE
INLFDILPLFRLNDGDGGFYLDKACVVSRDPLDPDNFGKQNVGIYRMEVKGKRKLGLQPV
EEHEEECEEEEEECCCCCEEECCEEEEECCCCCCCCCCCCCCCEEEEEECCCHHCCCCCC
PMHDIALHLHKAEERGEDLPIAITLGNDPIITLMGATPLKYDQSEYEMAGALRESPYPIA
CHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEE
TAPLTGFDVPWGSEVILEGVIESRKREIEGPFGEFTGHYSGGRNMTVVRIDKVSYRSKPI
ECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCEEEEEEEECCCCCCCCC
FESLYLGMPWTEIDYL
HHHHHCCCCCHHCCCC
>Mature Secondary Structure 
AFDDLRSFLQALDDHGQLLKISEEVNAEPDLAAAANATGRIGDGAPALWFDNIRGFTDA
CHHHHHHHHHHHCCCCCEEEEHHHCCCCCCHHHHCCCCCCCCCCCCEEEECCCCCCCHH
RVAMNTIGSWQNHAISLGLPPNTPVKKQIDEFIRRWDNFPIAPERRANPAWAQNTVDGEE
HHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCE
INLFDILPLFRLNDGDGGFYLDKACVVSRDPLDPDNFGKQNVGIYRMEVKGKRKLGLQPV
EEHEEECEEEEEECCCCCEEECCEEEEECCCCCCCCCCCCCCCEEEEEECCCHHCCCCCC
PMHDIALHLHKAEERGEDLPIAITLGNDPIITLMGATPLKYDQSEYEMAGALRESPYPIA
CHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEE
TAPLTGFDVPWGSEVILEGVIESRKREIEGPFGEFTGHYSGGRNMTVVRIDKVSYRSKPI
ECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCEEEEEEEECCCCCCCCC
FESLYLGMPWTEIDYL
HHHHHCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: 3-octaprenyl-4-hydroxybenzoate [C]

Specific reaction: 3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2 [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA