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The map label for this gene is ygbI

Identifier: 30064090

GI number: 30064090

Start: 2824200

End: 2824997

Strand: Reverse

Name: ygbI

Synonym: S2946

Alternate gene names: 30064090

Gene position: 2824997-2824200 (Counterclockwise)

Preceding gene: 30064093

Following gene: 30064088

Centisome position: 61.42

GC content: 51.13

Gene sequence:

>798_bases
ATGTCAGCAGGACAAAGGAAGGAGCAAAAGTTGATACCCGTAGAGCGTCGCCAAATCATCCTTGAGATGGTAGCTGAAAA
AGGCATTGTCAGTATTGCTGAACTAACGGACAGAATTAATGTGTCACATATGACCATTCGTCGGGATTTACAAAAACTGG
AGCAGCAGGGAGCCGTTGTGCTGGTGTCCGGAGGCGTCCAGTCTCCGGGACGCGTGGCGCATGAACCTTCTCATCAGGTA
AAAACTGCGCTGGCAATGACGCAAAAAGCGGCTATTGGCAAGCTGGCGGCAAGTCTTGTTCTGCCGGGAAGTTGTATCTA
TCTGGATGCGGGAACGACCACGTTAGCGATAGCACAGCATCTGATTCACATGGAGTCACTGACTGTGGTCACAAACGATT
TCGTTATTGCGAACTACTTGCTCGACAACAGTAATTGCACAATTATTCACACTGGCGGTGCAGTGTGTCGGGAAAACCGT
TCCTGTGTCGGGGAAGCCGCTGCGACCATGCTGTGCAGCCTGATGATTGATCAGGCTTTTATTTCTGCATCGTCATGGAG
TGTGCGGGGGATTTCTACGCCAGCGGAAGATAAAGTCACGGTGAAACGGGCGATTGCCAGTGCCAGCCGCCAGCGAGTTT
TGGTCTGTGATGCGACGAAATATGGTCAGGTGGCGACATGGCTGGCGTTACCATTAAGCGAGTTTGATCAGATTATTACA
GACGACGGTTTGCCGGAGAGTGCCAGTCGCGCGCTGGCGAAGCAGGATCTCTCTTTGCTGGTAGCGAAAAATGAATAA

Upstream 100 bases:

>100_bases
CGATATGGTGAGATGATTCACATAAATTAACATTTTGTGTTATTTTATGTGAACTAAGCGTTAGTTGCGCCGCGCACGTT
TCGCAGGCAAATAGCGTAGA

Downstream 100 bases:

>100_bases
TGGCCTGAAATAACATCTGGTTACTCATGCTTCACAGAAGAAGCATGAGACTACCTTATTTTATAAAATGACAGCCGCCC
ACTTTTCGGCGATCCGGTAT

Product: putative DEOR-type transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 264

Protein sequence:

>265_residues
MSAGQRKEQKLIPVERRQIILEMVAEKGIVSIAELTDRINVSHMTIRRDLQKLEQQGAVVLVSGGVQSPGRVAHEPSHQV
KTALAMTQKAAIGKLAASLVLPGSCIYLDAGTTTLAIAQHLIHMESLTVVTNDFVIANYLLDNSNCTIIHTGGAVCRENR
SCVGEAAATMLCSLMIDQAFISASSWSVRGISTPAEDKVTVKRAIASASRQRVLVCDATKYGQVATWLALPLSEFDQIIT
DDGLPESASRALAKQDLSLLVAKNE

Sequences:

>Translated_265_residues
MSAGQRKEQKLIPVERRQIILEMVAEKGIVSIAELTDRINVSHMTIRRDLQKLEQQGAVVLVSGGVQSPGRVAHEPSHQV
KTALAMTQKAAIGKLAASLVLPGSCIYLDAGTTTLAIAQHLIHMESLTVVTNDFVIANYLLDNSNCTIIHTGGAVCRENR
SCVGEAAATMLCSLMIDQAFISASSWSVRGISTPAEDKVTVKRAIASASRQRVLVCDATKYGQVATWLALPLSEFDQIIT
DDGLPESASRALAKQDLSLLVAKNE
>Mature_264_residues
SAGQRKEQKLIPVERRQIILEMVAEKGIVSIAELTDRINVSHMTIRRDLQKLEQQGAVVLVSGGVQSPGRVAHEPSHQVK
TALAMTQKAAIGKLAASLVLPGSCIYLDAGTTTLAIAQHLIHMESLTVVTNDFVIANYLLDNSNCTIIHTGGAVCRENRS
CVGEAAATMLCSLMIDQAFISASSWSVRGISTPAEDKVTVKRAIASASRQRVLVCDATKYGQVATWLALPLSEFDQIITD
DGLPESASRALAKQDLSLLVAKNE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI226510968, Length=255, Percent_Identity=97.6470588235294, Blast_Score=508, Evalue=1e-145,
Organism=Escherichia coli, GI1789519, Length=246, Percent_Identity=30.8943089430894, Blast_Score=121, Evalue=6e-29,
Organism=Escherichia coli, GI1789829, Length=246, Percent_Identity=30.8943089430894, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1789059, Length=251, Percent_Identity=29.4820717131474, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI87082344, Length=234, Percent_Identity=26.9230769230769, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1787540, Length=250, Percent_Identity=28, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1790635, Length=253, Percent_Identity=25.296442687747, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1790753, Length=253, Percent_Identity=27.2727272727273, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1787063, Length=210, Percent_Identity=30.4761904761905, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1788069, Length=229, Percent_Identity=24.8908296943231, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1789170, Length=238, Percent_Identity=26.0504201680672, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 28446; Mature: 28315

Theoretical pI: Translated: 7.47; Mature: 7.47

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAGQRKEQKLIPVERRQIILEMVAEKGIVSIAELTDRINVSHMTIRRDLQKLEQQGAVV
CCCCCCCHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEE
LVSGGVQSPGRVAHEPSHQVKTALAMTQKAAIGKLAASLVLPGSCIYLDAGTTTLAIAQH
EEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHH
LIHMESLTVVTNDFVIANYLLDNSNCTIIHTGGAVCRENRSCVGEAAATMLCSLMIDQAF
HHHHHHHEEEECCEEEEEEEEECCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHHHHHHH
ISASSWSVRGISTPAEDKVTVKRAIASASRQRVLVCDATKYGQVATWLALPLSEFDQIIT
HCCCCCEEECCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHCCHHHHHHHHC
DDGLPESASRALAKQDLSLLVAKNE
CCCCCHHHHHHHHHHCCEEEEEECC
>Mature Secondary Structure 
SAGQRKEQKLIPVERRQIILEMVAEKGIVSIAELTDRINVSHMTIRRDLQKLEQQGAVV
CCCCCCHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEE
LVSGGVQSPGRVAHEPSHQVKTALAMTQKAAIGKLAASLVLPGSCIYLDAGTTTLAIAQH
EEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHH
LIHMESLTVVTNDFVIANYLLDNSNCTIIHTGGAVCRENRSCVGEAAATMLCSLMIDQAF
HHHHHHHEEEECCEEEEEEEEECCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHHHHHHH
ISASSWSVRGISTPAEDKVTVKRAIASASRQRVLVCDATKYGQVATWLALPLSEFDQIIT
HCCCCCEEECCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHCCHHHHHHHHC
DDGLPESASRALAKQDLSLLVAKNE
CCCCCHHHHHHHHHHCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]