Definition | Shigella flexneri 2a str. 2457T, complete genome. |
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Accession | NC_004741 |
Length | 4,599,354 |
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The map label for this gene is fhlA
Identifier: 30064085
GI number: 30064085
Start: 2817298
End: 2819376
Strand: Direct
Name: fhlA
Synonym: S2940
Alternate gene names: 30064085
Gene position: 2817298-2819376 (Clockwise)
Preceding gene: 30064084
Following gene: 30064089
Centisome position: 61.25
GC content: 52.53
Gene sequence:
>2079_bases ATGTCATATACACCGATGAGTGATCTCGGACAGCAAGGGTTGTTCGACATCACTCGGACACTATTGCAGCAGCCCGATCT GGCCTCGCTGTGTGAGGCTCTTTCGCAACTGGTAAAGCGTTCTGCGCTCGCCGACAACGCGGCTATTGTGTTGTGGCAAG CGCAGACTCAACGTGCGTCTTATTACGCGTCGCGTGAAAAAGACACCCCCATTAAATATGAAGACGAAACTGTTCTGGCA CACGGTCCGGTACGCAGCATTTTGTCGCGCCCTGATACGCTGCATTGCAGTTACGAAGAATTTTGTGAAACCTGGCCGCA GCTGGCCGCAGGTGGGCTATACCCCAAATTTGGTCACTATTGCCTGATGCCACTGGCGGCGGGAGGGCATATTTTTGGTG GCTGTGAATTTATTCGTTATGACGAGCGTCCCTGGAGCGAAAAAGAGTTCAATCGTCTGCAAACATTTACGCAGATCGTT TCTGTCGTCACCGAACAAATCCAGAGCCGCGTCGTCAACAATGTCGACTATGAGTTGTTATGCCGGGAGCGCGATAACTT CCGCATCCTGGTTGCCATTACCAACGCGGTGCTTTCCCGCCTGGATATGGACGAACTGGTCAGCGAAGTCGCCAAAGAAA TCCATTACTATTTCGACATTGACGATATCAGCATTGTCTTACGCAGCCACCGTAAAAACAAACTCAACATCTACTCCACT CACTATCTTGATAAACAACATCCCGCCCACGAACAGAGCGAAGTCGATGAAGCCGGAACCCTCACCGAACGCGTGTTCAA AAGTAAAGAGATGCTGCTGATCAATCTCTACGAGCGGGACGATTTAGCCCCCTATGAACGCATGTTGTTCGACACCTGGG GCAACCAGATTCAAACCTTGTGCCTGTTACCGCTGATGTCTGGCGACACCATGCTGGGCGTGCTGAAACTGGCGCAATGC GAAGAGAAAGTGTTTACCACTACCAATCTGAATTTGCTGCGCCAGATTGCCGAACGTGTGGCAATCGCTGTCGATAACGC CCTCGCCTATCAGGAAATCCATCGTCTGAAAGAACGGCTGGTTGATGAAAACCTCGCCCTGACCGAGCAGCTCAACAATG TTGATAGTGAATTTGGCGAGATTATTGGCCGCAGCGAAGCCATGTACAGCGTGCTTAAACAAGTTGAAATGGTGGCGCAA AGTGACAGTACCGTGCTGATCCTCGGTGAAACTGGCTCGGGTAAAGAGCTGATTGCCCGTGCGATCCATAATCTCAGTGG GCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATG AGCGTGGGGCTTTTACCGGTGCCAACGCCCAGCGCATTGGTCGTTTTGAACTGGCGGATAAAAGCTCTCTGTTCCTCGAC GAAGTGGGCGATATGCCACTGGAGTTACAGCCGAAGTTGCTGCGTGTATTGCAGGAACAGGAGTTTGAACGTCTCGGCAG CAACAAAATCATTCAGACGGACGTACGTTTAATTGCCGCGACTAACCGCGATCTGAAAAAAATGGTCGCCGACCGAGAGT TCCGTAGCGATCTCTATTACCGCCTGAACGTATTCCCGATTCACCTGCCGCCACTACGCGAGCGTCCGGAAGATATTCCG CTGCTGGCGAAAGCCTTTACCTTCAAAATTGCCCGTCGTCTGGGGCGCAATATCGACAGCATTCCTGCCGAGACGCTGCG CACCTTGAGCAACATGGAGTGGCCGGGTAACGTACGCGAACTGGAAAACGTCATTGAGCGCGCAGTATTGCTAACACGCG GCAACGTGCTGCAGCTGTCATTGCCAGATATTGCTTTACCGGAGCCTGAAACGCCGCCTGCCGCAACGGTTGTCGCCCAG GAGGGCGAAGATGAATATCAGTTGATTGTGCGCGTGCTGAAAGAAACCAACAGCGTGGTTGCCGGGCCTAAAGGCGCTGC GCAACGTCTGGGGCTGAAACGCACGACCCTGCTGTCACGGATGAAGCGGCTGGGAATTGATAAATCGGCATTGATTTAA
Upstream 100 bases:
>100_bases GCCGAACCGCTTCCGCGTATATGCTAATAAAATTCTAAATCTCCTATAGTTAGTCAATGACCTTTTGCACCGCTTTGCGG TGCTTTCCTGGAAGAACAAA
Downstream 100 bases:
>100_bases CTGCAAATTGCCGGACAGATCTGCCTGTCCGGCATACTATTCACGAGGTTTTTTCGGACGATATTTTTCCGGCAGTTCTG GCACCGGACGCTTGTCATCG
Product: formate hydrogen-lyase transcriptional activator for fdhF, hyc and hyp operons
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 692; Mature: 691
Protein sequence:
>692_residues MSYTPMSDLGQQGLFDITRTLLQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQRASYYASREKDTPIKYEDETVLA HGPVRSILSRPDTLHCSYEEFCETWPQLAAGGLYPKFGHYCLMPLAAGGHIFGGCEFIRYDERPWSEKEFNRLQTFTQIV SVVTEQIQSRVVNNVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYST HYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLYERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQC EEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQ SDSTVLILGETGSGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGANAQRIGRFELADKSSLFLD EVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIP LLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIALPEPETPPAATVVAQ EGEDEYQLIVRVLKETNSVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSALI
Sequences:
>Translated_692_residues MSYTPMSDLGQQGLFDITRTLLQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQRASYYASREKDTPIKYEDETVLA HGPVRSILSRPDTLHCSYEEFCETWPQLAAGGLYPKFGHYCLMPLAAGGHIFGGCEFIRYDERPWSEKEFNRLQTFTQIV SVVTEQIQSRVVNNVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYST HYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLYERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQC EEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQ SDSTVLILGETGSGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGANAQRIGRFELADKSSLFLD EVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIP LLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIALPEPETPPAATVVAQ EGEDEYQLIVRVLKETNSVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSALI >Mature_691_residues SYTPMSDLGQQGLFDITRTLLQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQRASYYASREKDTPIKYEDETVLAH GPVRSILSRPDTLHCSYEEFCETWPQLAAGGLYPKFGHYCLMPLAAGGHIFGGCEFIRYDERPWSEKEFNRLQTFTQIVS VVTEQIQSRVVNNVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTH YLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLYERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCE EKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQS DSTVLILGETGSGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGANAQRIGRFELADKSSLFLDE VGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPL LAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIALPEPETPPAATVVAQE GEDEYQLIVRVLKETNSVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSALI
Specific function: Required for induction of expression of the formate dehydrogenase H and hydrogenase-3 structural genes [H]
COG id: COG3604
COG function: function code KT; Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 sigma-54 factor interaction domain [H]
Homologues:
Organism=Escherichia coli, GI1789087, Length=692, Percent_Identity=98.6994219653179, Blast_Score=1407, Evalue=0.0, Organism=Escherichia coli, GI87082117, Length=566, Percent_Identity=50.530035335689, Blast_Score=516, Evalue=1e-147, Organism=Escherichia coli, GI1790437, Length=313, Percent_Identity=46.3258785942492, Blast_Score=268, Evalue=1e-72, Organism=Escherichia coli, GI1788550, Length=322, Percent_Identity=45.6521739130435, Blast_Score=266, Evalue=5e-72, Organism=Escherichia coli, GI1788905, Length=307, Percent_Identity=46.2540716612378, Blast_Score=250, Evalue=2e-67, Organism=Escherichia coli, GI87082152, Length=366, Percent_Identity=39.0710382513661, Blast_Score=242, Evalue=5e-65, Organism=Escherichia coli, GI1790299, Length=365, Percent_Identity=40.8219178082192, Blast_Score=239, Evalue=4e-64, Organism=Escherichia coli, GI1789233, Length=322, Percent_Identity=40.3726708074534, Blast_Score=233, Evalue=2e-62, Organism=Escherichia coli, GI87081872, Length=265, Percent_Identity=44.9056603773585, Blast_Score=211, Evalue=2e-55, Organism=Escherichia coli, GI1786524, Length=332, Percent_Identity=37.6506024096386, Blast_Score=201, Evalue=1e-52, Organism=Escherichia coli, GI1787583, Length=333, Percent_Identity=36.036036036036, Blast_Score=188, Evalue=1e-48, Organism=Escherichia coli, GI1789828, Length=254, Percent_Identity=36.2204724409449, Blast_Score=142, Evalue=6e-35, Organism=Escherichia coli, GI87081858, Length=326, Percent_Identity=31.5950920245399, Blast_Score=135, Evalue=6e-33,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR003018 - InterPro: IPR020441 - InterPro: IPR009057 - InterPro: IPR002197 - InterPro: IPR002078 [H]
Pfam domain/function: PF01590 GAF; PF02954 HTH_8; PF00158 Sigma54_activat [H]
EC number: NA
Molecular weight: Translated: 78423; Mature: 78292
Theoretical pI: Translated: 5.40; Mature: 5.40
Prosite motif: PS00675 SIGMA54_INTERACT_1 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSYTPMSDLGQQGLFDITRTLLQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQRAS CCCCCHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHH YYASREKDTPIKYEDETVLAHGPVRSILSRPDTLHCSYEEFCETWPQLAAGGLYPKFGHY HHHCCCCCCCCCCCCCEEEECCCHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCHHCCE CLMPLAAGGHIFGGCEFIRYDERPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELL EEHHCCCCCCEECCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE CRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYST EECCCCCEEEEEEHHHHHHHCCHHHHHHHHHHHHHEEECCHHHHHHHHHCCCCCEEEEEE HYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLYERDDLAPYERMLFDTWGNQIQTL ECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHH CLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERL HHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGSGKELIAR HCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHH AIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGANAQRIGRFELADKSSLFLD HHHHCCCCCCCEEEEEECHHCCCHHHHHHHCCCCCCCCCCCCHHHCCCEEECCCCHHHHH EVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY HHCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEHHHHHEEECCHHHHHHHHHHHHHHCCEE RLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRE EEEEEEEECCCHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHH LENVIERAVLLTRGNVLQLSLPDIALPEPETPPAATVVAQEGEDEYQLIVRVLKETNSVV HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEE AGPKGAAQRLGLKRTTLLSRMKRLGIDKSALI CCCCHHHHHCCCHHHHHHHHHHHCCCCHHHCC >Mature Secondary Structure SYTPMSDLGQQGLFDITRTLLQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQRAS CCCCHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHH YYASREKDTPIKYEDETVLAHGPVRSILSRPDTLHCSYEEFCETWPQLAAGGLYPKFGHY HHHCCCCCCCCCCCCCEEEECCCHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCHHCCE CLMPLAAGGHIFGGCEFIRYDERPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELL EEHHCCCCCCEECCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE CRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYST EECCCCCEEEEEEHHHHHHHCCHHHHHHHHHHHHHEEECCHHHHHHHHHCCCCCEEEEEE HYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINLYERDDLAPYERMLFDTWGNQIQTL ECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHH CLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERL HHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGSGKELIAR HCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHH AIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGANAQRIGRFELADKSSLFLD HHHHCCCCCCCEEEEEECHHCCCHHHHHHHCCCCCCCCCCCCHHHCCCEEECCCCHHHHH EVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY HHCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEHHHHHEEECCHHHHHHHHHHHHHHCCEE RLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRE EEEEEEEECCCHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHH LENVIERAVLLTRGNVLQLSLPDIALPEPETPPAATVVAQEGEDEYQLIVRVLKETNSVV HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEE AGPKGAAQRLGLKRTTLLSRMKRLGIDKSALI CCCCHHHHHCCCHHHHHHHHHHHCCCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2280686; 2118503; 9278503 [H]