Definition | Shigella flexneri 2a str. 2457T, complete genome. |
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Accession | NC_004741 |
Length | 4,599,354 |
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The map label for this gene is yfjG
Identifier: 30064017
GI number: 30064017
Start: 2747461
End: 2747898
Strand: Reverse
Name: yfjG
Synonym: S2856
Alternate gene names: 30064017
Gene position: 2747898-2747461 (Counterclockwise)
Preceding gene: 30064031
Following gene: 30064016
Centisome position: 59.75
GC content: 48.86
Gene sequence:
>438_bases ATGCCTCAGATTAGCCGGACCGCACTGGTACCCTACAGCGCGGAGCAAATGTATCAGTTAGTGAATGACGTTCAGTCTTA TCCTCAGTTTTTGCCAGGTTGTACCGGAAGTCGGATTCTGGAGTCCACTCCTGGGCAGATGACTGCGGCGGTAGATGTCT CTAAGGCTGGGATCAGCAAAACGTTTACTACCCGCAACCAGTTGACCAGTAACCAAAGTATTCTTATGAATCTGGTGGAT GGGCCGTTCAAGAAATTGATTGGTGGATGGAAGTTTACGCCGCTGAGCCAGGAGGCGTGTCGTATCGAGTTTCATCTCGA CTTTGAGTTTACCAATAAGTTGATTGAACTCGCCTTTGGTCGCGTGTTTAAAGAGCTGGCGGCTAATATGGTCCAGGCTT TTACGGTTCGTGCGAAAGAGGTTTACAGTGCTAGGTAA
Upstream 100 bases:
>100_bases ATCTTAGCATGAACCCGATGTTACCCAGCGCCGGGATAGCGTTTTTTTTACAGCAGGATAAATGATATTATTTGTTGGAT TTTTGTTGATGGAAATTGTT
Downstream 100 bases:
>100_bases AATTGCCGTTGAGGTGGCTTATGCGCTACCTGAGAAGCAATACCTGCAGCGAGTGACGCTGCAGGAGGGCGCGACGGTTG AAGAAGCTATTCGCGCCAGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 145; Mature: 144
Protein sequence:
>145_residues MPQISRTALVPYSAEQMYQLVNDVQSYPQFLPGCTGSRILESTPGQMTAAVDVSKAGISKTFTTRNQLTSNQSILMNLVD GPFKKLIGGWKFTPLSQEACRIEFHLDFEFTNKLIELAFGRVFKELAANMVQAFTVRAKEVYSAR
Sequences:
>Translated_145_residues MPQISRTALVPYSAEQMYQLVNDVQSYPQFLPGCTGSRILESTPGQMTAAVDVSKAGISKTFTTRNQLTSNQSILMNLVD GPFKKLIGGWKFTPLSQEACRIEFHLDFEFTNKLIELAFGRVFKELAANMVQAFTVRAKEVYSAR >Mature_144_residues PQISRTALVPYSAEQMYQLVNDVQSYPQFLPGCTGSRILESTPGQMTAAVDVSKAGISKTFTTRNQLTSNQSILMNLVDG PFKKLIGGWKFTPLSQEACRIEFHLDFEFTNKLIELAFGRVFKELAANMVQAFTVRAKEVYSAR
Specific function: Unknown
COG id: COG2867
COG function: function code I; Oligoketide cyclase/lipid transport protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0083 family
Homologues:
Organism=Homo sapiens, GI151101384, Length=131, Percent_Identity=28.2442748091603, Blast_Score=64, Evalue=6e-11, Organism=Homo sapiens, GI151101386, Length=138, Percent_Identity=27.536231884058, Blast_Score=64, Evalue=6e-11, Organism=Escherichia coli, GI1788972, Length=145, Percent_Identity=100, Blast_Score=303, Evalue=2e-84,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): YFJG_ECOLI (P0AGL5)
Other databases:
- EMBL: D12501 - EMBL: U36840 - EMBL: U00096 - EMBL: AP009048 - PIR: T08632 - RefSeq: AP_003199.1 - RefSeq: NP_417109.1 - ProteinModelPortal: P0AGL5 - SMR: P0AGL5 - STRING: P0AGL5 - EnsemblBacteria: EBESCT00000003993 - EnsemblBacteria: EBESCT00000017486 - GeneID: 945614 - GenomeReviews: AP009048_GR - GenomeReviews: U00096_GR - KEGG: ecj:JW2600 - KEGG: eco:b2619 - EchoBASE: EB2985 - EcoGene: EG13193 - eggNOG: COG2867 - GeneTree: EBGT00050000010526 - HOGENOM: HBG751297 - OMA: DGPFKYL - ProtClustDB: PRK10724 - BioCyc: EcoCyc:G7358-MONOMER - Genevestigator: P0AGL5 - InterPro: IPR005031
Pfam domain/function: PF03364 Polyketide_cyc
EC number: NA
Molecular weight: Translated: 16220; Mature: 16089
Theoretical pI: Translated: 9.15; Mature: 9.15
Prosite motif: PS00036 BZIP_BASIC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPQISRTALVPYSAEQMYQLVNDVQSYPQFLPGCTGSRILESTPGQMTAAVDVSKAGISK CCCCCCCEECCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCEEEEEEHHHHCCHH TFTTRNQLTSNQSILMNLVDGPFKKLIGGWKFTPLSQEACRIEFHLDFEFTNKLIELAFG HHHHHHHHCCCHHHHHHHHCCHHHHHHCCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHH RVFKELAANMVQAFTVRAKEVYSAR HHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure PQISRTALVPYSAEQMYQLVNDVQSYPQFLPGCTGSRILESTPGQMTAAVDVSKAGISK CCCCCCEECCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCEEEEEEHHHHCCHH TFTTRNQLTSNQSILMNLVDGPFKKLIGGWKFTPLSQEACRIEFHLDFEFTNKLIELAFG HHHHHHHHCCCHHHHHHHHCCHHHHHHCCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHH RVFKELAANMVQAFTVRAKEVYSAR HHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7524073; 9205837; 9278503