| Definition | Shigella flexneri 2a str. 2457T, complete genome. |
|---|---|
| Accession | NC_004741 |
| Length | 4,599,354 |
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The map label for this gene is yecI
Identifier: 30063349
GI number: 30063349
Start: 1959864
End: 1960367
Strand: Direct
Name: yecI
Synonym: S2041
Alternate gene names: 30063349
Gene position: 1959864-1960367 (Clockwise)
Preceding gene: 30063345
Following gene: 30063351
Centisome position: 42.61
GC content: 48.21
Gene sequence:
>504_bases ATGGCAACCGCTGGAATGCTTCTCAAACTCAACTCTCAAATGAACCGCGAGTTTTACGCATCCAATCTCTACCTTCACCT GAGTAACTGGTGTTCTGAACAGAGTCTGAACGGCACCGCCACTTTCCTTCGCGCCCAGGCACAGAGTAATGTGACCCAAA TGATGCGCATGTTTAACTTTATGAAGAGTGTCGGCGCTACCCCCATCGTTAAAGCCATTGATGTTCCAGGTGAAAAACTG AACTCTCTGGAAGAACTGTTCCAAAAAACGATGGAAGAATACGAGCAACGTTCAAGCACTCTGGCGCAGTTAGCCGATGA AGCGAAAGAACTGAATGATGATTCAACCGTCAATTTCCTGCGCGATCTGGAAAAAGAACAGCAGCATGATGGCCTGTTGC TGCAAACCATTCTTGATGAAGTGCGCAGTGCGAAACTTGCGGGTATGTGCCCTGTGCAGACCGACCAACATGTTCTGAAT GTCGTGTCACACCAGCTGCATTGA
Upstream 100 bases:
>100_bases CACATTTCGGACCGGCAGAAAGGAATTATTCTGCAAACAGTAATTATGGTGTTTTGATTTATCTTGCACCTCTCCACTTC TGGATATAAGGATATTAGGT
Downstream 100 bases:
>100_bases TCATACATCGGCGCTAATACATTGCGCCGATGAAGTTTTTGAGAAACCGCTGCCTCATCTGTTTGAAGCAGCGGTTTTTT TAATGGGATTCACCCTGTGG
Product: ferritin-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 167; Mature: 166
Protein sequence:
>167_residues MATAGMLLKLNSQMNREFYASNLYLHLSNWCSEQSLNGTATFLRAQAQSNVTQMMRMFNFMKSVGATPIVKAIDVPGEKL NSLEELFQKTMEEYEQRSSTLAQLADEAKELNDDSTVNFLRDLEKEQQHDGLLLQTILDEVRSAKLAGMCPVQTDQHVLN VVSHQLH
Sequences:
>Translated_167_residues MATAGMLLKLNSQMNREFYASNLYLHLSNWCSEQSLNGTATFLRAQAQSNVTQMMRMFNFMKSVGATPIVKAIDVPGEKL NSLEELFQKTMEEYEQRSSTLAQLADEAKELNDDSTVNFLRDLEKEQQHDGLLLQTILDEVRSAKLAGMCPVQTDQHVLN VVSHQLH >Mature_166_residues ATAGMLLKLNSQMNREFYASNLYLHLSNWCSEQSLNGTATFLRAQAQSNVTQMMRMFNFMKSVGATPIVKAIDVPGEKLN SLEELFQKTMEEYEQRSSTLAQLADEAKELNDDSTVNFLRDLEKEQQHDGLLLQTILDEVRSAKLAGMCPVQTDQHVLNV VSHQLH
Specific function: Unknown
COG id: COG1528
COG function: function code P; Ferritin-like protein
Gene ontology:
Cell location: Cytoplasm (Potential)
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ferritin-like diiron domain
Homologues:
Organism=Escherichia coli, GI1788212, Length=167, Percent_Identity=100, Blast_Score=346, Evalue=4e-97, Organism=Escherichia coli, GI1788216, Length=148, Percent_Identity=35.8108108108108, Blast_Score=99, Evalue=1e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): FTNB_ECO57 (P0A9A4)
Other databases:
- EMBL: AE005174 - EMBL: BA000007 - PIR: B90955 - PIR: G85803 - RefSeq: NP_288337.1 - RefSeq: NP_310637.1 - ProteinModelPortal: P0A9A4 - SMR: P0A9A4 - EnsemblBacteria: EBESCT00000027304 - EnsemblBacteria: EBESCT00000056106 - GeneID: 913020 - GeneID: 961871 - GenomeReviews: AE005174_GR - GenomeReviews: BA000007_GR - KEGG: ece:Z2956 - KEGG: ecs:ECs2610 - GeneTree: EBGT00050000010394 - HOGENOM: HBG750128 - OMA: NTQMNLE - ProtClustDB: PRK15022 - BioCyc: ECOL83334:ECS2610-MONOMER - GO: GO:0005737 - InterPro: IPR009040 - InterPro: IPR012347 - InterPro: IPR009078 - InterPro: IPR008331 - InterPro: IPR001519 - Gene3D: G3DSA:1.20.1260.10 - PANTHER: PTHR11431
Pfam domain/function: PF00210 Ferritin; SSF47240 Ferritin/RR_like
EC number: NA
Molecular weight: Translated: 18895; Mature: 18764
Theoretical pI: Translated: 4.98; Mature: 4.98
Prosite motif: PS50905 FERRITIN_LIKE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 5.4 %Met (Translated Protein) 6.6 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 4.8 %Met (Mature Protein) 6.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATAGMLLKLNSQMNREFYASNLYLHLSNWCSEQSLNGTATFLRAQAQSNVTQMMRMFNF CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH MKSVGATPIVKAIDVPGEKLNSLEELFQKTMEEYEQRSSTLAQLADEAKELNDDSTVNFL HHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH RDLEKEQQHDGLLLQTILDEVRSAKLAGMCPVQTDQHVLNVVSHQLH HHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCC >Mature Secondary Structure ATAGMLLKLNSQMNREFYASNLYLHLSNWCSEQSLNGTATFLRAQAQSNVTQMMRMFNF CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH MKSVGATPIVKAIDVPGEKLNSLEELFQKTMEEYEQRSSTLAQLADEAKELNDDSTVNFL HHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH RDLEKEQQHDGLLLQTILDEVRSAKLAGMCPVQTDQHVLNVVSHQLH HHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: Fe [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796