Click here to switch to the map view.

The map label for this gene is yddW

Identifier: 30063218

GI number: 30063218

Start: 1811207

End: 1812526

Strand: Direct

Name: yddW

Synonym: S1869

Alternate gene names: 30063218

Gene position: 1811207-1812526 (Clockwise)

Preceding gene: 30063217

Following gene: 30063219

Centisome position: 39.38

GC content: 51.82

Gene sequence:

>1320_bases
ATGGATATCTGCTCCCGAAACAAGAAATTAACGATTAGAAGACCAGCGATACTGGTTGCATTGGCACTTTTACTGTGTAG
TTGTAAAAGCACGCCTCCAGAGTCCATGGTGACACCACCAGCAGGTTCAAAGCCACCAGCCACGACGCAACAATCGTCAC
AACCGATGCGTGGCATCTGGCTGGCCACGGTTTCTCGCCTCGACTGGCCACCGGTTTCCTCGGTTAACATTAGTAATCCC
ACCAGCCGAGCCCGTGTACAACAACAGGCGATGATCGACAAACTGGATCATCTCCAACGTCTCGGCATAAACACGGTCTT
TTTCCAGGTCAAGCCGGACGGTACCGCCCTGTGGCCATCGAAAATTTTGCCGTGGTCCGATCTTATGACCGGTAAGATTG
GTGAAAATCCGGGTTACGATCCGCTGCAATTCATGCTCGACGAAGCCCACAAGCGTGGGATGAAAGTACACGCCTGGTTT
AACCCCTATCGCGTATCGGTTAATACGAAGCCCGGTACTATCAGGGAACTGAATAGCACTCTGTCTCAACAACCGGCGAG
CGTCTATGTGCAACACCGTGACTGGATCAGAACGTCTGGCGATCGCTTTGTCCTCGACCCGGGCATCCCTGAGGTTCAGG
ACTGGATCACATCAATAGTCGCTGAAGTGGTTTCCCGCTATCCGGTAGATGGCGTGCAGTTTGACGACTATTTCTATACT
GAATCACCGGGTTCACGGCTAAATGATAACGAAACGTACCGTAAATACGGAGGCGCATTTGCGTCAAAAGCAGACTGGCG
GCGCAACAATACTCAGCAGTTAATTGCAAAGGTATCACACACCATTAAAAGCATTAAGCCGGGAGTCGAATTTGGCGTTA
GCCCGGCAGGCGTGTGGCGTAACCGATCACACGATCCGCTCGGTTCCGATACCCGAGGCGCGGCAGCCTATGACGAATCC
TACGCAGACACCCGTCGATGGGTGGAACAAGGATTGCTGGATTACATTGCTCCCCAAATTTACTGGCCGTTCTCACGGAG
TGCCGCGCGTTATGACGTGTTGGCAAAATGGTGGGCGGATGTCGTTAAACCAACCAGGACCCGCCTGTATATCGGTATCG
CCTTCTATAAAGTGGGTGAACCTTCAAAGATAGAGCCAGACTGGATGATTAACGGCGGCGTACCGGAACTGAAAAAGCAG
CTCGATCTTAACGATGCGGTACCAGAAATTAGCGGCACCATCTTGTTCCGTGAGGACTATCTGAATAAACCGCAGACTCA
ACAAGCGGTCAGCTATCTGCAAAGTCGTTGGGGCAGTTAA

Upstream 100 bases:

>100_bases
CGATAATTCATCGCTCCCTTTTTCGTGCTTGCTGTCGTATTGACTTAACCGGGATAAGTACGAGAATGAGCGCACATCTG
TTTACCGGAAACCAGCACAT

Downstream 100 bases:

>100_bases
ACTACCATGCTTACTTTGTAACAAGCCGGTGCTTTACCCACCGGCTTGTTACACCTTGTGAAATATCCCACTAGTAATCA
TGCTTACATAAGTCAAATTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 439; Mature: 439

Protein sequence:

>439_residues
MDICSRNKKLTIRRPAILVALALLLCSCKSTPPESMVTPPAGSKPPATTQQSSQPMRGIWLATVSRLDWPPVSSVNISNP
TSRARVQQQAMIDKLDHLQRLGINTVFFQVKPDGTALWPSKILPWSDLMTGKIGENPGYDPLQFMLDEAHKRGMKVHAWF
NPYRVSVNTKPGTIRELNSTLSQQPASVYVQHRDWIRTSGDRFVLDPGIPEVQDWITSIVAEVVSRYPVDGVQFDDYFYT
ESPGSRLNDNETYRKYGGAFASKADWRRNNTQQLIAKVSHTIKSIKPGVEFGVSPAGVWRNRSHDPLGSDTRGAAAYDES
YADTRRWVEQGLLDYIAPQIYWPFSRSAARYDVLAKWWADVVKPTRTRLYIGIAFYKVGEPSKIEPDWMINGGVPELKKQ
LDLNDAVPEISGTILFREDYLNKPQTQQAVSYLQSRWGS

Sequences:

>Translated_439_residues
MDICSRNKKLTIRRPAILVALALLLCSCKSTPPESMVTPPAGSKPPATTQQSSQPMRGIWLATVSRLDWPPVSSVNISNP
TSRARVQQQAMIDKLDHLQRLGINTVFFQVKPDGTALWPSKILPWSDLMTGKIGENPGYDPLQFMLDEAHKRGMKVHAWF
NPYRVSVNTKPGTIRELNSTLSQQPASVYVQHRDWIRTSGDRFVLDPGIPEVQDWITSIVAEVVSRYPVDGVQFDDYFYT
ESPGSRLNDNETYRKYGGAFASKADWRRNNTQQLIAKVSHTIKSIKPGVEFGVSPAGVWRNRSHDPLGSDTRGAAAYDES
YADTRRWVEQGLLDYIAPQIYWPFSRSAARYDVLAKWWADVVKPTRTRLYIGIAFYKVGEPSKIEPDWMINGGVPELKKQ
LDLNDAVPEISGTILFREDYLNKPQTQQAVSYLQSRWGS
>Mature_439_residues
MDICSRNKKLTIRRPAILVALALLLCSCKSTPPESMVTPPAGSKPPATTQQSSQPMRGIWLATVSRLDWPPVSSVNISNP
TSRARVQQQAMIDKLDHLQRLGINTVFFQVKPDGTALWPSKILPWSDLMTGKIGENPGYDPLQFMLDEAHKRGMKVHAWF
NPYRVSVNTKPGTIRELNSTLSQQPASVYVQHRDWIRTSGDRFVLDPGIPEVQDWITSIVAEVVSRYPVDGVQFDDYFYT
ESPGSRLNDNETYRKYGGAFASKADWRRNNTQQLIAKVSHTIKSIKPGVEFGVSPAGVWRNRSHDPLGSDTRGAAAYDES
YADTRRWVEQGLLDYIAPQIYWPFSRSAARYDVLAKWWADVVKPTRTRLYIGIAFYKVGEPSKIEPDWMINGGVPELKKQ
LDLNDAVPEISGTILFREDYLNKPQTQQAVSYLQSRWGS

Specific function: Unknown

COG id: COG1649

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential)

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0748 family

Homologues:

Organism=Escherichia coli, GI1787767, Length=439, Percent_Identity=100, Blast_Score=905, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YDDW_ECO57 (P64427)

Other databases:

- EMBL:   AE005174
- EMBL:   BA000007
- PIR:   H90890
- RefSeq:   NP_287664.1
- RefSeq:   NP_310123.1
- ProteinModelPortal:   P64427
- EnsemblBacteria:   EBESCT00000024320
- EnsemblBacteria:   EBESCT00000055997
- GeneID:   917296
- GeneID:   960677
- GenomeReviews:   AE005174_GR
- GenomeReviews:   BA000007_GR
- KEGG:   ece:Z2217
- KEGG:   ecs:ECs2096
- GeneTree:   EBGT00050000008957
- HOGENOM:   HBG364398
- OMA:   WRNIADD
- ProtClustDB:   CLSK880041
- BioCyc:   ECOL83334:ECS2096-MONOMER
- InterPro:   IPR003790
- InterPro:   IPR017853
- InterPro:   IPR013781
- Gene3D:   G3DSA:3.20.20.80

Pfam domain/function: PF02638 DUF187; SSF51445 Glyco_hydro_cat

EC number: NA

Molecular weight: Translated: 49575; Mature: 49575

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: PS51257 PROKAR_LIPOPROTEIN; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDICSRNKKLTIRRPAILVALALLLCSCKSTPPESMVTPPAGSKPPATTQQSSQPMRGIW
CCCCCCCCEEEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
LATVSRLDWPPVSSVNISNPTSRARVQQQAMIDKLDHLQRLGINTVFFQVKPDGTALWPS
HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEECCC
KILPWSDLMTGKIGENPGYDPLQFMLDEAHKRGMKVHAWFNPYRVSVNTKPGTIRELNST
CCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECEEEEEEECCCCHHHHHHHH
LSQQPASVYVQHRDWIRTSGDRFVLDPGIPEVQDWITSIVAEVVSRYPVDGVQFDDYFYT
HHCCCHHEEEEHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEECCEEEE
ESPGSRLNDNETYRKYGGAFASKADWRRNNTQQLIAKVSHTIKSIKPGVEFGVSPAGVWR
CCCCCCCCCCHHHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCHHHCCCCHHHCC
NRSHDPLGSDTRGAAAYDESYADTRRWVEQGLLDYIAPQIYWPFSRSAARYDVLAKWWAD
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHH
VVKPTRTRLYIGIAFYKVGEPSKIEPDWMINGGVPELKKQLDLNDAVPEISGTILFREDY
HHCCCCEEEEEEEEEEECCCCCCCCCCEEECCCCHHHHHHCCCCCCCCCCCCEEEEEHHH
LNKPQTQQAVSYLQSRWGS
CCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDICSRNKKLTIRRPAILVALALLLCSCKSTPPESMVTPPAGSKPPATTQQSSQPMRGIW
CCCCCCCCEEEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
LATVSRLDWPPVSSVNISNPTSRARVQQQAMIDKLDHLQRLGINTVFFQVKPDGTALWPS
HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEECCC
KILPWSDLMTGKIGENPGYDPLQFMLDEAHKRGMKVHAWFNPYRVSVNTKPGTIRELNST
CCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECEEEEEEECCCCHHHHHHHH
LSQQPASVYVQHRDWIRTSGDRFVLDPGIPEVQDWITSIVAEVVSRYPVDGVQFDDYFYT
HHCCCHHEEEEHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEECCEEEE
ESPGSRLNDNETYRKYGGAFASKADWRRNNTQQLIAKVSHTIKSIKPGVEFGVSPAGVWR
CCCCCCCCCCHHHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCHHHCCCCHHHCC
NRSHDPLGSDTRGAAAYDESYADTRRWVEQGLLDYIAPQIYWPFSRSAARYDVLAKWWAD
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHH
VVKPTRTRLYIGIAFYKVGEPSKIEPDWMINGGVPELKKQLDLNDAVPEISGTILFREDY
HHCCCCEEEEEEEEEEECCCCCCCCCCEEECCCCHHHHHHCCCCCCCCCCCCEEEEEHHH
LNKPQTQQAVSYLQSRWGS
CCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796