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The map label for this gene is ydhJ [H]

Identifier: 30063161

GI number: 30063161

Start: 1738947

End: 1739813

Strand: Direct

Name: ydhJ [H]

Synonym: S1803

Alternate gene names: 30063161

Gene position: 1738947-1739813 (Clockwise)

Preceding gene: 30063160

Following gene: 30063165

Centisome position: 37.81

GC content: 49.83

Gene sequence:

>867_bases
GTGGTAACTATGTCAATTAAAACAATTAAGTATTTCTCAACAATCATTGTAGCGATAGTTGCGGTTCTTGCCGGATGGTG
GCTGTGGAATTATTACATGCAATCTCCGTGGACACGCGACGGGAAAATACGCGCAGAACAGGTTTCTATCACCCCACAGG
TGTCGGGACGTATTGTTGAGCTGAATATAAAAGACAACCAACTGGTTAACGCGGGGGAACTTCTGCTCACGATCGATAAA
ACGCCCTTTCAGATCGCCGAGCTGAACGCACAGGCTCAGCTGGCGAAAGCGCAATCTGACCTCGCAAAAGCCAATAACGA
AGCGAATCGTCGTCGTCATCTCTCACAAAATTTTATTTTTGCCGAAGAACTCGATACCGCTAACCTCAATGTTAAAGCGA
TGCAGGCCAGTGTTAATGCCGCACAGGCGACGCTGAAACAGACACAATGGCAACTGGCGCAAACGGAAATTCGCGCCCCG
GTGAGTGGATGGGTGACTAACCTCACTACCCGCATCGGCGATTACGCTGACACCGGGAAACCGCTGTTTGCCCTTGTCGA
CAGCCACTCGTTTTACGTCATTGGTTATTTTGAAGAAACCAAGTTGCGCCATATCCGCGAAGGTGCACCAGCACAAATTA
CCCTCTATAGTGATAACAAAACGTTACAGGGTCACGTTTCCAGTATCGGTCGGGCGATTTATGATCAGAGCGTTGAAAGT
GACTCAAGCCTTATTCCGGATGTGAAACCTAACGTCCCCTGGGTTCGTCTCGCCCAACTCGTTCCCGTCCGCTTTGCGCT
GGATAAAGTTCCAGGCGATGTCACGCTGGTGTCGGGCACCACCTGTAGCATTGCCGTAGGTCAATAA

Upstream 100 bases:

>100_bases
TTCGTGGCTGGATCTACGCCGGCGATATCTGGCATCCCTTGTTAATGGATTTATCGCTGTTTGCGATTTGCGTTTGCCTT
GCTCTGGCAATACTGATTGC

Downstream 100 bases:

>100_bases
TGAACGCATCGTCATGGTCCTTGCGCAATTTGCCCTGGTTCAGGGCCACGCTGGCGCAATGGCGTTATGCGTTACGCAAT
ACCATTGCCATGTGTCTGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 288; Mature: 288

Protein sequence:

>288_residues
MVTMSIKTIKYFSTIIVAIVAVLAGWWLWNYYMQSPWTRDGKIRAEQVSITPQVSGRIVELNIKDNQLVNAGELLLTIDK
TPFQIAELNAQAQLAKAQSDLAKANNEANRRRHLSQNFIFAEELDTANLNVKAMQASVNAAQATLKQTQWQLAQTEIRAP
VSGWVTNLTTRIGDYADTGKPLFALVDSHSFYVIGYFEETKLRHIREGAPAQITLYSDNKTLQGHVSSIGRAIYDQSVES
DSSLIPDVKPNVPWVRLAQLVPVRFALDKVPGDVTLVSGTTCSIAVGQ

Sequences:

>Translated_288_residues
MVTMSIKTIKYFSTIIVAIVAVLAGWWLWNYYMQSPWTRDGKIRAEQVSITPQVSGRIVELNIKDNQLVNAGELLLTIDK
TPFQIAELNAQAQLAKAQSDLAKANNEANRRRHLSQNFIFAEELDTANLNVKAMQASVNAAQATLKQTQWQLAQTEIRAP
VSGWVTNLTTRIGDYADTGKPLFALVDSHSFYVIGYFEETKLRHIREGAPAQITLYSDNKTLQGHVSSIGRAIYDQSVES
DSSLIPDVKPNVPWVRLAQLVPVRFALDKVPGDVTLVSGTTCSIAVGQ
>Mature_288_residues
MVTMSIKTIKYFSTIIVAIVAVLAGWWLWNYYMQSPWTRDGKIRAEQVSITPQVSGRIVELNIKDNQLVNAGELLLTIDK
TPFQIAELNAQAQLAKAQSDLAKANNEANRRRHLSQNFIFAEELDTANLNVKAMQASVNAAQATLKQTQWQLAQTEIRAP
VSGWVTNLTTRIGDYADTGKPLFALVDSHSFYVIGYFEETKLRHIREGAPAQITLYSDNKTLQGHVSSIGRAIYDQSVES
DSSLIPDVKPNVPWVRLAQLVPVRFALDKVPGDVTLVSGTTCSIAVGQ

Specific function: Unknown

COG id: COG1566

COG function: function code V; Multidrug resistance efflux pump

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family [H]

Homologues:

Organism=Escherichia coli, GI87081951, Length=285, Percent_Identity=97.8947368421053, Blast_Score=574, Evalue=1e-165,
Organism=Escherichia coli, GI1789637, Length=282, Percent_Identity=40.0709219858156, Blast_Score=196, Evalue=1e-51,
Organism=Escherichia coli, GI1790519, Length=293, Percent_Identity=31.740614334471, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1788711, Length=311, Percent_Identity=26.3665594855305, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1789041, Length=303, Percent_Identity=27.7227722772277, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI87082036, Length=136, Percent_Identity=32.3529411764706, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1790012, Length=269, Percent_Identity=24.1635687732342, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1790024, Length=254, Percent_Identity=24.4094488188976, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006143 [H]

Pfam domain/function: PF00529 HlyD [H]

EC number: NA

Molecular weight: Translated: 31902; Mature: 31902

Theoretical pI: Translated: 8.40; Mature: 8.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTMSIKTIKYFSTIIVAIVAVLAGWWLWNYYMQSPWTRDGKIRAEQVSITPQVSGRIVE
CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCEEEE
LNIKDNQLVNAGELLLTIDKTPFQIAELNAQAQLAKAQSDLAKANNEANRRRHLSQNFIF
EEECCCCEECCCCEEEEECCCCCEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCEE
AEELDTANLNVKAMQASVNAAQATLKQTQWQLAQTEIRAPVSGWVTNLTTRIGDYADTGK
EECCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCC
PLFALVDSHSFYVIGYFEETKLRHIREGAPAQITLYSDNKTLQGHVSSIGRAIYDQSVES
CEEEEEECCCEEEEEEECHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCC
DSSLIPDVKPNVPWVRLAQLVPVRFALDKVPGDVTLVSGTTCSIAVGQ
CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCEEEEEECC
>Mature Secondary Structure
MVTMSIKTIKYFSTIIVAIVAVLAGWWLWNYYMQSPWTRDGKIRAEQVSITPQVSGRIVE
CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCEEEE
LNIKDNQLVNAGELLLTIDKTPFQIAELNAQAQLAKAQSDLAKANNEANRRRHLSQNFIF
EEECCCCEECCCCEEEEECCCCCEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCEE
AEELDTANLNVKAMQASVNAAQATLKQTQWQLAQTEIRAPVSGWVTNLTTRIGDYADTGK
EECCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCC
PLFALVDSHSFYVIGYFEETKLRHIREGAPAQITLYSDNKTLQGHVSSIGRAIYDQSVES
CEEEEEECCCEEEEEEECHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCC
DSSLIPDVKPNVPWVRLAQLVPVRFALDKVPGDVTLVSGTTCSIAVGQ
CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]