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The map label for this gene is rnfD

Identifier: 30063145

GI number: 30063145

Start: 1725498

End: 1726556

Strand: Direct

Name: rnfD

Synonym: S1787

Alternate gene names: 30063145

Gene position: 1725498-1726556 (Clockwise)

Preceding gene: 30063144

Following gene: 30063146

Centisome position: 37.52

GC content: 53.07

Gene sequence:

>1059_bases
ATGGTATTCAGAATAGCTAGCTCCCCTTATACCCATAACCAGCGCCAGACATCGCGCATTATGCTGTTGGTGTTGCTCGC
AGCCGTGCCAGGAATCGCAGCGCAACTGCGGTTTTTTGGTTGGGGTACTCTCGTTCAGATCCTGTTGGCGTCGGTCAGTG
CTCTGTTAGCCGAAGCTCTCGTACTCAAACTACGCAAGCAGTCGGTAGCCGCAACGTTGAAAGATAACTCAGCATTGCTG
ACAGGCTTATTGCTGGCGGTAAGTATTCCCCCCCTAGCGCCATGGTGGATGGTCGTACTGGGTACGGTGTTTGCGGTGAT
CATCGCTAAACAGTTGTATGGCGGTCTGGGGCAAAACCCGTTTAATCCGGCAATGATTGGTTATGTGGTCTTACTGATCT
CCTTCCCGGTGCAGATGACCAGCTGGTTACCGCCACATGAAATTGCGGTCAACATCCCTGGTTTTATCGACGCCATACAG
GTTATTTTCAGCGGTCATACCGCCAGTGGTGGTGATATGAATACGCTACGCTTAGGTATTGATGGCATTAGTCAGGCGAC
ACCGCTGGATACATTCAAAACCTCTGTCCGCGCAGGTCATTCGGTTGAACAGATTATGCAATATCCGATCTACAGCGGTA
TTCTGGCGGGCGCTGGTTGGCAATGGGTAAATCTCGCCTGGCTGGCTGGTGGCGTGTGGTTGCTATGGCAGAAAGCGATT
CGCTGGCATATTCCCCTCAGCTTCTTAGTAACGCTGGCGTTATGCGCAACGTTGGGCTGGTTGTTCTCACCAGAAACACT
GGCAGCACCGCAAATTCATCTGCTGTCTGGTGCGACTATGCTCGGCGCATTCTTTATTTTGACTGACCCAGTTACTGCTT
CTACGACCAATCGTGGTCGGCTGATGTTCGGCGCGCTGGCGGGCTTATTAGTCTGGTTGATCCGCAGTTTCGGCGGCTAT
CCTGACGGCGTGGCTTTTGCCGTCCTGCTGGCGAACATCACGGTTCCTCTGATCGATTACTACACGCGTCCGCGCGTCTA
CGGCCATCGCAAAGGGTAA

Upstream 100 bases:

>100_bases
AGAAGAACAGGTCGATCCGCGCAAAGCCGCAGTTGCCGCGGCTATTGCCCGCGTTCAGGCCAAAAAAGCCGCCCAGCAAA
AGGTTGTAAACGAGGACTAA

Downstream 100 bases:

>100_bases
ACCATGCTGAAAACTATCCGAAAACACGGCATTACACTGGCACTATTTGCAGCGGGTTCTACAGGGTTAACTGCGGCCAT
CAACCAGATGACCAAAACGA

Product: electron transport complex protein RnfD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 352; Mature: 352

Protein sequence:

>352_residues
MVFRIASSPYTHNQRQTSRIMLLVLLAAVPGIAAQLRFFGWGTLVQILLASVSALLAEALVLKLRKQSVAATLKDNSALL
TGLLLAVSIPPLAPWWMVVLGTVFAVIIAKQLYGGLGQNPFNPAMIGYVVLLISFPVQMTSWLPPHEIAVNIPGFIDAIQ
VIFSGHTASGGDMNTLRLGIDGISQATPLDTFKTSVRAGHSVEQIMQYPIYSGILAGAGWQWVNLAWLAGGVWLLWQKAI
RWHIPLSFLVTLALCATLGWLFSPETLAAPQIHLLSGATMLGAFFILTDPVTASTTNRGRLMFGALAGLLVWLIRSFGGY
PDGVAFAVLLANITVPLIDYYTRPRVYGHRKG

Sequences:

>Translated_352_residues
MVFRIASSPYTHNQRQTSRIMLLVLLAAVPGIAAQLRFFGWGTLVQILLASVSALLAEALVLKLRKQSVAATLKDNSALL
TGLLLAVSIPPLAPWWMVVLGTVFAVIIAKQLYGGLGQNPFNPAMIGYVVLLISFPVQMTSWLPPHEIAVNIPGFIDAIQ
VIFSGHTASGGDMNTLRLGIDGISQATPLDTFKTSVRAGHSVEQIMQYPIYSGILAGAGWQWVNLAWLAGGVWLLWQKAI
RWHIPLSFLVTLALCATLGWLFSPETLAAPQIHLLSGATMLGAFFILTDPVTASTTNRGRLMFGALAGLLVWLIRSFGGY
PDGVAFAVLLANITVPLIDYYTRPRVYGHRKG
>Mature_352_residues
MVFRIASSPYTHNQRQTSRIMLLVLLAAVPGIAAQLRFFGWGTLVQILLASVSALLAEALVLKLRKQSVAATLKDNSALL
TGLLLAVSIPPLAPWWMVVLGTVFAVIIAKQLYGGLGQNPFNPAMIGYVVLLISFPVQMTSWLPPHEIAVNIPGFIDAIQ
VIFSGHTASGGDMNTLRLGIDGISQATPLDTFKTSVRAGHSVEQIMQYPIYSGILAGAGWQWVNLAWLAGGVWLLWQKAI
RWHIPLSFLVTLALCATLGWLFSPETLAAPQIHLLSGATMLGAFFILTDPVTASTTNRGRLMFGALAGLLVWLIRSFGGY
PDGVAFAVLLANITVPLIDYYTRPRVYGHRKG

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4658

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrB/rnfD family [H]

Homologues:

Organism=Escherichia coli, GI1787917, Length=352, Percent_Identity=99.1477272727273, Blast_Score=689, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011303
- InterPro:   IPR004338 [H]

Pfam domain/function: PF03116 NQR2_RnfD_RnfE [H]

EC number: NA

Molecular weight: Translated: 38099; Mature: 38099

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVFRIASSPYTHNQRQTSRIMLLVLLAAVPGIAAQLRFFGWGTLVQILLASVSALLAEAL
CEEEEECCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLKLRKQSVAATLKDNSALLTGLLLAVSIPPLAPWWMVVLGTVFAVIIAKQLYGGLGQNP
HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
FNPAMIGYVVLLISFPVQMTSWLPPHEIAVNIPGFIDAIQVIFSGHTASGGDMNTLRLGI
CCHHHHHHHHHHHHHHHHHHCCCCCHHEEEECCHHHHHHHHHHCCCCCCCCCCEEEEECC
DGISQATPLDTFKTSVRAGHSVEQIMQYPIYSGILAGAGWQWVNLAWLAGGVWLLWQKAI
CCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
RWHIPLSFLVTLALCATLGWLFSPETLAAPQIHLLSGATMLGAFFILTDPVTASTTNRGR
HHCCCHHHHHHHHHHHHHHHHCCCCHHCCCCCHHHCCHHHHHHHHHEECCCCCCCCCCCH
LMFGALAGLLVWLIRSFGGYPDGVAFAVLLANITVPLIDYYTRPRVYGHRKG
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MVFRIASSPYTHNQRQTSRIMLLVLLAAVPGIAAQLRFFGWGTLVQILLASVSALLAEAL
CEEEEECCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLKLRKQSVAATLKDNSALLTGLLLAVSIPPLAPWWMVVLGTVFAVIIAKQLYGGLGQNP
HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
FNPAMIGYVVLLISFPVQMTSWLPPHEIAVNIPGFIDAIQVIFSGHTASGGDMNTLRLGI
CCHHHHHHHHHHHHHHHHHHCCCCCHHEEEECCHHHHHHHHHHCCCCCCCCCCEEEEECC
DGISQATPLDTFKTSVRAGHSVEQIMQYPIYSGILAGAGWQWVNLAWLAGGVWLLWQKAI
CCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
RWHIPLSFLVTLALCATLGWLFSPETLAAPQIHLLSGATMLGAFFILTDPVTASTTNRGR
HHCCCHHHHHHHHHHHHHHHHCCCCHHCCCCCHHHCCHHHHHHHHHEECCCCCCCCCCCH
LMFGALAGLLVWLIRSFGGYPDGVAFAVLLANITVPLIDYYTRPRVYGHRKG
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA