Click here to switch to the map view.

The map label for this gene is ydeY

Identifier: 30063085

GI number: 30063085

Start: 1655052

End: 1656080

Strand: Direct

Name: ydeY

Synonym: S1710

Alternate gene names: 30063085

Gene position: 1655052-1656080 (Clockwise)

Preceding gene: 30063084

Following gene: 30063086

Centisome position: 35.98

GC content: 53.84

Gene sequence:

>1029_bases
ATGCTGAAGTTTATTCAGAACAACCGTGAAATCACGGCATTGCTGGCGGTGGTGCTGCTGTTTGTATTACCCGGTTTTCT
CGACCGCCAGTATTTAAGTGTGCAAACGCTGACCATGGTTTATAGCAGCGCGCAAATCCTGATCCTGCTGGCAATGGGCG
CGACGCTGGTAATGCTTACGCGCAATATTGATGTTTCAGTGGGTTCGATTACCGGAATGTGCGCGGTGCTGTTGGGGATG
TTACTGAACGCAGGATATTCACTACCTGTTGCCTGTGTCGCGACTTTACTGCTTGGTTTGCTCGCGGGATTTTTCAACGG
TGCCCTGGTCGCGTGGCTAAAGATCCCTGCCATTGTTGCCACCCTTGGCACGTTAGGGTTGTACAGAGGCATCATGTTGC
TGTGGACTGGCGGTAAATGGATTGAAGGGTTACCCGCCGAACTGAAACAGCTCTCCGCCCCGCTGCTGCTTGGCATTTCA
GCAATTGGTTGGTTGACGATAATTCTGGTGGCATTTATGGCCTGGCTGCTGGCGAAGACGGCGTTTGGACGCAGTTTTTA
TGCCACGGGCGATAATTTACAGGGCGCTCGTCAACTGGGCGTTCGTACGGAAGCCATTCGCATTGTGGCATTTTCGTTGA
ACGGCTGCATGGCGGCACTGGCGGGAATTGTGTTTGCTTCGCAGATTGGTTTTATCCTCAACCAGACCGGTACCGGGCTG
GAGATGAAAGCAATTGCAGCCTGCGTGCTGGGCGGCATTAGTTTGCTCGGTGGTTCCGGTGCGATCATCGGTGCGGTACT
CGGCGCATGGTTCCTGACGCAGATCGATAGCGTACTGGTGCTGTTGCGCATTCCGGCATGGTGGAATGATTTTATCGCGG
GTCTGGTTCTGCTGGCGGTGCTGGTGTTTGATGGACGCCTGCGTTGTGCGCTGGAACGTAATCTACGGCGGCAAAAATAT
GCCCGCTTTATGACGCCACCGCCATCCGTTAAACCCGCTTCGTCAGGTAAAAAACGGGAGGCCGCATAA

Upstream 100 bases:

>100_bases
ATCAGGGCGAAATTACCCACTCTGCACTGACCGGGCGCGATATTAATGTCGAGACTATTATGCGCGTTGCCTTCGGCGAT
AGTCAGCGTCAGGAGGCATC

Downstream 100 bases:

>100_bases
TGCGTATTCGCTACGGTTGGGAACTGGCTCTTGCCGCACTGCTCGTTATTGAGATTGTCGCATTTGGTGCAATTAACCCG
CGAATGTTAGATCTCAATAT

Product: putative transport system permease protein

Products: NA

Alternate protein names: AI-2 import system permease protein lsrC [H]

Number of amino acids: Translated: 342; Mature: 342

Protein sequence:

>342_residues
MLKFIQNNREITALLAVVLLFVLPGFLDRQYLSVQTLTMVYSSAQILILLAMGATLVMLTRNIDVSVGSITGMCAVLLGM
LLNAGYSLPVACVATLLLGLLAGFFNGALVAWLKIPAIVATLGTLGLYRGIMLLWTGGKWIEGLPAELKQLSAPLLLGIS
AIGWLTIILVAFMAWLLAKTAFGRSFYATGDNLQGARQLGVRTEAIRIVAFSLNGCMAALAGIVFASQIGFILNQTGTGL
EMKAIAACVLGGISLLGGSGAIIGAVLGAWFLTQIDSVLVLLRIPAWWNDFIAGLVLLAVLVFDGRLRCALERNLRRQKY
ARFMTPPPSVKPASSGKKREAA

Sequences:

>Translated_342_residues
MLKFIQNNREITALLAVVLLFVLPGFLDRQYLSVQTLTMVYSSAQILILLAMGATLVMLTRNIDVSVGSITGMCAVLLGM
LLNAGYSLPVACVATLLLGLLAGFFNGALVAWLKIPAIVATLGTLGLYRGIMLLWTGGKWIEGLPAELKQLSAPLLLGIS
AIGWLTIILVAFMAWLLAKTAFGRSFYATGDNLQGARQLGVRTEAIRIVAFSLNGCMAALAGIVFASQIGFILNQTGTGL
EMKAIAACVLGGISLLGGSGAIIGAVLGAWFLTQIDSVLVLLRIPAWWNDFIAGLVLLAVLVFDGRLRCALERNLRRQKY
ARFMTPPPSVKPASSGKKREAA
>Mature_342_residues
MLKFIQNNREITALLAVVLLFVLPGFLDRQYLSVQTLTMVYSSAQILILLAMGATLVMLTRNIDVSVGSITGMCAVLLGM
LLNAGYSLPVACVATLLLGLLAGFFNGALVAWLKIPAIVATLGTLGLYRGIMLLWTGGKWIEGLPAELKQLSAPLLLGIS
AIGWLTIILVAFMAWLLAKTAFGRSFYATGDNLQGARQLGVRTEAIRIVAFSLNGCMAALAGIVFASQIGFILNQTGTGL
EMKAIAACVLGGISLLGGSGAIIGAVLGAWFLTQIDSVLVLLRIPAWWNDFIAGLVLLAVLVFDGRLRCALERNLRRQKY
ARFMTPPPSVKPASSGKKREAA

Specific function: Part of the ABC transporter complex lsrABCD involved in autoinducer 2 (AI-2) import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787793, Length=342, Percent_Identity=99.1228070175439, Blast_Score=661, Evalue=0.0,
Organism=Escherichia coli, GI1789992, Length=362, Percent_Identity=30.939226519337, Blast_Score=131, Evalue=7e-32,
Organism=Escherichia coli, GI145693152, Length=267, Percent_Identity=34.4569288389513, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1790191, Length=305, Percent_Identity=31.1475409836066, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1788896, Length=303, Percent_Identity=30.3630363036304, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1790524, Length=277, Percent_Identity=27.4368231046931, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI145693214, Length=285, Percent_Identity=34.3859649122807, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI87082395, Length=325, Percent_Identity=30.1538461538462, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1787794, Length=311, Percent_Identity=30.2250803858521, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1788471, Length=307, Percent_Identity=29.9674267100977, Blast_Score=80, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 36397; Mature: 36397

Theoretical pI: Translated: 10.41; Mature: 10.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKFIQNNREITALLAVVLLFVLPGFLDRQYLSVQTLTMVYSSAQILILLAMGATLVMLT
CCCCCCCCCHHHHHHHHHHHHHHCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RNIDVSVGSITGMCAVLLGMLLNAGYSLPVACVATLLLGLLAGFFNGALVAWLKIPAIVA
CCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLGTLGLYRGIMLLWTGGKWIEGLPAELKQLSAPLLLGISAIGWLTIILVAFMAWLLAKT
HHHHHHHHHHHHEEECCCHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFGRSFYATGDNLQGARQLGVRTEAIRIVAFSLNGCMAALAGIVFASQIGFILNQTGTGL
HHCCCEECCCCCCCHHHHHCCHHHHHEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCC
EMKAIAACVLGGISLLGGSGAIIGAVLGAWFLTQIDSVLVLLRIPAWWNDFIAGLVLLAV
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
LVFDGRLRCALERNLRRQKYARFMTPPPSVKPASSGKKREAA
HHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLKFIQNNREITALLAVVLLFVLPGFLDRQYLSVQTLTMVYSSAQILILLAMGATLVMLT
CCCCCCCCCHHHHHHHHHHHHHHCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RNIDVSVGSITGMCAVLLGMLLNAGYSLPVACVATLLLGLLAGFFNGALVAWLKIPAIVA
CCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLGTLGLYRGIMLLWTGGKWIEGLPAELKQLSAPLLLGISAIGWLTIILVAFMAWLLAKT
HHHHHHHHHHHHEEECCCHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFGRSFYATGDNLQGARQLGVRTEAIRIVAFSLNGCMAALAGIVFASQIGFILNQTGTGL
HHCCCEECCCCCCCHHHHHCCHHHHHEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCC
EMKAIAACVLGGISLLGGSGAIIGAVLGAWFLTQIDSVLVLLRIPAWWNDFIAGLVLLAV
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
LVFDGRLRCALERNLRRQKYARFMTPPPSVKPASSGKKREAA
HHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]