Definition | Shigella flexneri 2a str. 2457T, complete genome. |
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Accession | NC_004741 |
Length | 4,599,354 |
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The map label for this gene is ycjU
Identifier: 30062836
GI number: 30062836
Start: 1374913
End: 1375572
Strand: Direct
Name: ycjU
Synonym: S1406
Alternate gene names: 30062836
Gene position: 1374913-1375572 (Clockwise)
Preceding gene: 30062835
Following gene: 30062837
Centisome position: 29.89
GC content: 56.67
Gene sequence:
>660_bases ATGAAACTGCAAGGGGTAATTTTCGATCTGGATGGTGTAATCACCGATACCGCGCATCTGCATTTCCAGGCGTGGCAGCA GATTGCCGCTGAAATTGGCATCAGTATTGATGCGCAGTTTAACGAATCTCTAAAAGGGATCAGCCGCGATGAGTCTCTGC GGCGCATTCTGCAACACGGGGGCAAAGAGGGCGACTTTAACCCGCAGGAGCGGGCGCAACTGGCGTATCGCAAAAATCTG CTTTACGTCCACTCACTGCGCGAGCTGACGGTTAATGCTGTGCTGCCCGGTATTCGCAATTTGCTGGCAGAGCTCCGTGC ACAGCAGATTCCGGTAGGGCTGGCTTCCGTCTCCCTGAATGCGCCGACGATTTTAGCGGCGCTGGAGCTGCGTGAGTTTT TCACCTTCTGCGCGGATGCTTCCCAACTTAAAAACTCGAAACCGGATCCGGAAATCTTTCTCGCTGCCTGTGCCGGGCTG GGCGTGCCGCCGCAGGCATGTATCGGCATTGAAGATGCGCAGGCGGGCATTGACGCCATTAACGCCAGCGGTATGCGCTC GGTGGGGATCGGTGCGGGCTTAACCGGGGCGCAATTACTGTTGCCCTCAACGGACTCCCTGACCTGGTCGCGGTTATCGG CCTTCTGGCAAAACGTATAG
Upstream 100 bases:
>100_bases TGGACGGTCAGCTTATATCCGTGGCTGAAGAATCTGTTTTCTGTTTGGGTGATTTTATTTTGCCCTTCAATGGGACCGCT ACCACGCATCAGGAGGATGA
Downstream 100 bases:
>100_bases CAAAGGAATCAACATGGCTCAGCTTTCGTTACAACATATTCAAAAAATCTACGATAACCAGGTGCATGTGGTGAAGGACT TCAACCTGGAAATTGCCGAT
Product: putative beta-phosphoglucomutase
Products: NA
Alternate protein names: Beta-PGM [H]
Number of amino acids: Translated: 219; Mature: 219
Protein sequence:
>219_residues MKLQGVIFDLDGVITDTAHLHFQAWQQIAAEIGISIDAQFNESLKGISRDESLRRILQHGGKEGDFNPQERAQLAYRKNL LYVHSLRELTVNAVLPGIRNLLAELRAQQIPVGLASVSLNAPTILAALELREFFTFCADASQLKNSKPDPEIFLAACAGL GVPPQACIGIEDAQAGIDAINASGMRSVGIGAGLTGAQLLLPSTDSLTWSRLSAFWQNV
Sequences:
>Translated_219_residues MKLQGVIFDLDGVITDTAHLHFQAWQQIAAEIGISIDAQFNESLKGISRDESLRRILQHGGKEGDFNPQERAQLAYRKNL LYVHSLRELTVNAVLPGIRNLLAELRAQQIPVGLASVSLNAPTILAALELREFFTFCADASQLKNSKPDPEIFLAACAGL GVPPQACIGIEDAQAGIDAINASGMRSVGIGAGLTGAQLLLPSTDSLTWSRLSAFWQNV >Mature_219_residues MKLQGVIFDLDGVITDTAHLHFQAWQQIAAEIGISIDAQFNESLKGISRDESLRRILQHGGKEGDFNPQERAQLAYRKNL LYVHSLRELTVNAVLPGIRNLLAELRAQQIPVGLASVSLNAPTILAALELREFFTFCADASQLKNSKPDPEIFLAACAGL GVPPQACIGIEDAQAGIDAINASGMRSVGIGAGLTGAQLLLPSTDSLTWSRLSAFWQNV
Specific function: Reversible transformation of glucose 6-phosphate and beta-glucose 1-phosphate [H]
COG id: COG0637
COG function: function code R; Predicted phosphatase/phosphohexomutase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family [H]
Homologues:
Organism=Homo sapiens, GI197382691, Length=199, Percent_Identity=28.643216080402, Blast_Score=72, Evalue=3e-13, Organism=Escherichia coli, GI1787576, Length=219, Percent_Identity=97.2602739726027, Blast_Score=432, Evalue=1e-122, Organism=Escherichia coli, GI1789046, Length=191, Percent_Identity=30.8900523560209, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1788021, Length=188, Percent_Identity=30.3191489361702, Blast_Score=75, Evalue=2e-15, Organism=Escherichia coli, GI1789787, Length=212, Percent_Identity=25.4716981132075, Blast_Score=63, Evalue=1e-11, Organism=Drosophila melanogaster, GI17137324, Length=197, Percent_Identity=28.4263959390863, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI116008157, Length=200, Percent_Identity=27.5, Blast_Score=70, Evalue=7e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010976 - InterPro: IPR010972 - InterPro: IPR005834 - InterPro: IPR023214 - InterPro: IPR006402 - InterPro: IPR005833 [H]
Pfam domain/function: PF00702 Hydrolase [H]
EC number: =5.4.2.6 [H]
Molecular weight: Translated: 23602; Mature: 23602
Theoretical pI: Translated: 5.25; Mature: 5.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLQGVIFDLDGVITDTAHLHFQAWQQIAAEIGISIDAQFNESLKGISRDESLRRILQHG CCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCHHHHHHHHCC GKEGDFNPQERAQLAYRKNLLYVHSLRELTVNAVLPGIRNLLAELRAQQIPVGLASVSLN CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECC APTILAALELREFFTFCADASQLKNSKPDPEIFLAACAGLGVPPQACIGIEDAQAGIDAI CCHHHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHCCCCCHHHHCCCCHHHHCHHHH NASGMRSVGIGAGLTGAQLLLPSTDSLTWSRLSAFWQNV CCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCC >Mature Secondary Structure MKLQGVIFDLDGVITDTAHLHFQAWQQIAAEIGISIDAQFNESLKGISRDESLRRILQHG CCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCHHHHHHHHCC GKEGDFNPQERAQLAYRKNLLYVHSLRELTVNAVLPGIRNLLAELRAQQIPVGLASVSLN CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECC APTILAALELREFFTFCADASQLKNSKPDPEIFLAACAGLGVPPQACIGIEDAQAGIDAI CCHHHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHCCCCCHHHHCCCCHHHHCHHHH NASGMRSVGIGAGLTGAQLLLPSTDSLTWSRLSAFWQNV CCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9097039; 9278503 [H]