Definition | Shigella flexneri 2a str. 2457T, complete genome. |
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Accession | NC_004741 |
Length | 4,599,354 |
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The map label for this gene is ymfC
Identifier: 30062682
GI number: 30062682
Start: 1198375
End: 1198998
Strand: Reverse
Name: ymfC
Synonym: S1237
Alternate gene names: 30062682
Gene position: 1198998-1198375 (Counterclockwise)
Preceding gene: 30062684
Following gene: 30062681
Centisome position: 26.07
GC content: 51.6
Gene sequence:
>624_bases ATGCAAAAAACTTCTTTTAGAAATCACCAGGTTAAGCGATTCAGCTCGCAACGTTCTACCAGGCGTAAACATGAAAACCA GCCCACGCGTGTGATCCTCTTCAATAAACCCTACGATGTTCTTCCGCAGTTCACCGATGAAACCGGACGCAAAACATTAA AAGAATTCATCCCGGTTCAGGGCGTTTATGCAGCAGGTCGCCTTGACCGCGATAGCGAAGGGTTGCTGGTGCTGACCAAT AACGGCGCGTTGCAGGCGCGTTTAACCCAGCCGGGTAAACGCACCGGAAAAATCTATTATGTGCAGGTGGAAGGTATTCC CACACAAGACGCACTTGAAGCCTTGCGCAATGGCGTAACCTTAAATGATGGCCCTACCCTGCCCGCAGGCGCGGAGCTGG TTGACGAACCCGCGTGGTTATGGCCGCGGAATCCACCAATTCGTGAACGCAAAAGTATTCCCACCAGCTGGCTGAAGATC ACCTTATATGAAGGACGTAATCGCCAGGTGCGCCGCATGACCGCCCATGTTGGTTTCCCCACGCTGCGACTGATTCGCTA TGCGATGGGAGATTACTCTTTGGATAATCTTGCCAATGGCGAATGGCGAGAAGTGACAGATTAA
Upstream 100 bases:
>100_bases GATTTGTAATTGACTTGTCAATACTACCCTATTGTTTGCCGTCATGAAAGATGCGCGTTATTAGGCTATAATGCGGCAAT TCATAATCTCTGAAAATACC
Downstream 100 bases:
>100_bases GGATGCAAAATGTTTAAACCGCACGTTACCGTTGCTTGCGTGGTGCACGCAGAAGGCAAATTTTTAGTCGTTGAAGAGAC GATTAATGGTAAAGCGTTAT
Product: 23S rRNA pseudouridine synthase E
Products: NA
Alternate protein names: rRNA pseudouridylate synthase E; rRNA-uridine isomerase E [H]
Number of amino acids: Translated: 207; Mature: 207
Protein sequence:
>207_residues MQKTSFRNHQVKRFSSQRSTRRKHENQPTRVILFNKPYDVLPQFTDETGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTN NGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKI TLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD
Sequences:
>Translated_207_residues MQKTSFRNHQVKRFSSQRSTRRKHENQPTRVILFNKPYDVLPQFTDETGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTN NGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKI TLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD >Mature_207_residues MQKTSFRNHQVKRFSSQRSTRRKHENQPTRVILFNKPYDVLPQFTDETGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTN NGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKI TLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD
Specific function: Responsible for synthesis of pseudouridine from uracil- 2457 in 23S ribosomal RNA [H]
COG id: COG1187
COG function: function code J; 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pseudouridine synthase rsuA family [H]
Homologues:
Organism=Escherichia coli, GI87081838, Length=207, Percent_Identity=99.0338164251208, Blast_Score=421, Evalue=1e-119, Organism=Escherichia coli, GI1787524, Length=193, Percent_Identity=33.6787564766839, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1790453, Length=184, Percent_Identity=29.8913043478261, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1788510, Length=182, Percent_Identity=32.967032967033, Blast_Score=76, Evalue=1e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020103 - InterPro: IPR006145 - InterPro: IPR000748 - InterPro: IPR018496 [H]
Pfam domain/function: PF00849 PseudoU_synth_2 [H]
EC number: NA
Molecular weight: Translated: 23730; Mature: 23730
Theoretical pI: Translated: 10.55; Mature: 10.55
Prosite motif: PS01149 PSI_RSU
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQKTSFRNHQVKRFSSQRSTRRKHENQPTRVILFNKPYDVLPQFTDETGRKTLKEFIPVQ CCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHCCCCCCHHHHHHHHHHCCCC GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVT CEEECCCCCCCCCCEEEEECCCEEEEEECCCCCCCCEEEEEEECCCCCHHHHHHHHCCEE LNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFP ECCCCCCCCCHHHHCCCCEECCCCCCCHHHHCCCCEEEEEEEECCCCCHHHHHHHHCCCH TLRLIRYAMGDYSLDNLANGEWREVTD HHHHHHHHHCCCCHHHCCCCCEEECCC >Mature Secondary Structure MQKTSFRNHQVKRFSSQRSTRRKHENQPTRVILFNKPYDVLPQFTDETGRKTLKEFIPVQ CCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHCCCCCCHHHHHHHHHHCCCC GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVT CEEECCCCCCCCCCEEEEECCCEEEEEECCCCCCCCEEEEEEECCCCCHHHHHHHHCCEE LNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFP ECCCCCCCCCHHHHCCCCEECCCCCCCHHHHCCCCEEEEEEEECCCCCHHHHHHHHCCCH TLRLIRYAMGDYSLDNLANGEWREVTD HHHHHHHHHCCCCHHHCCCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]