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The map label for this gene is ybiH

Identifier: 30062281

GI number: 30062281

Start: 768956

End: 769639

Strand: Reverse

Name: ybiH

Synonym: S0787

Alternate gene names: 30062281

Gene position: 769639-768956 (Counterclockwise)

Preceding gene: 30062283

Following gene: 30062280

Centisome position: 16.73

GC content: 54.24

Gene sequence:

>684_bases
ATGGACTGTGCGATGAATAATCCTGCCATGACAATCAAGGGTGAACAGGCGAAAAAACAGCTGATTGCTGCCGCACTGGC
GCAGTTTGGTGAATATGGAATGAACGCCACCACCCGCGAGATAGCCGCCCAGGCCGGGCAGAATATCGCTGCCATCACCT
ACTACTTCGGTTCGAAAGAAGATTTGTACCTCGCCTGCGCCCAGTGGATTGCCGATTTTATTGGCGAGCAGTTCCGTCCG
CATGCCGAGGAAGCCGAACGCTTGTTCGCCCAACCACAGCCTGATCGGGCTGCCATCCGTGAACTGATCCTTCGCGCCTG
CAGGAACATGATTAAGCTGCTCACCCAGGATGACACCGTCAACCTCAGCAAGTTTATCTCCCGTGAGCAGCTCTCTCCCA
CGGCAGCCTACCACCTGGTGCACGAACAGGTGATTAGTCCGCTACACAGCCACCTGACACGCCTGATTGCCGCCTGGACC
GGCTGCGACGCTAATGACACCCGCATGATCCTTCATACCCATGCGTTGATTGGTGAGATTCTGGCGTTCCGTCTTGGCAA
AGAAACAATTCTGTTACGTACCGGCTGGACCGCGTTCGATGAAGAAAAGACCGAACTGATCAACCAGACGGTGACCTGTC
ATATCGACCTGATTTTGCAAGGATTATCGCAAAGGAGTTTGTAG

Upstream 100 bases:

>100_bases
AGCGCATAAATTATCCCTGTGACTGGCGTAGCTAAAATTCTTAGCCATACTGGACAACTCCCATATGGAGTCATAATCTT
AATCAATCATTTGATTAAGA

Downstream 100 bases:

>100_bases
TGATGAAAAAACCTGTCGTGATCGGACTGGCGGTAGTGGTACTTGCCGCCGTGGTTGCCGGAGGCTACTGGTGGTATCAA
AGCCGCCAGGATAACGGCCT

Product: putative DNA-binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MDCAMNNPAMTIKGEQAKKQLIAAALAQFGEYGMNATTREIAAQAGQNIAAITYYFGSKEDLYLACAQWIADFIGEQFRP
HAEEAERLFAQPQPDRAAIRELILRACRNMIKLLTQDDTVNLSKFISREQLSPTAAYHLVHEQVISPLHSHLTRLIAAWT
GCDANDTRMILHTHALIGEILAFRLGKETILLRTGWTAFDEEKTELINQTVTCHIDLILQGLSQRSL

Sequences:

>Translated_227_residues
MDCAMNNPAMTIKGEQAKKQLIAAALAQFGEYGMNATTREIAAQAGQNIAAITYYFGSKEDLYLACAQWIADFIGEQFRP
HAEEAERLFAQPQPDRAAIRELILRACRNMIKLLTQDDTVNLSKFISREQLSPTAAYHLVHEQVISPLHSHLTRLIAAWT
GCDANDTRMILHTHALIGEILAFRLGKETILLRTGWTAFDEEKTELINQTVTCHIDLILQGLSQRSL
>Mature_227_residues
MDCAMNNPAMTIKGEQAKKQLIAAALAQFGEYGMNATTREIAAQAGQNIAAITYYFGSKEDLYLACAQWIADFIGEQFRP
HAEEAERLFAQPQPDRAAIRELILRACRNMIKLLTQDDTVNLSKFISREQLSPTAAYHLVHEQVISPLHSHLTRLIAAWT
GCDANDTRMILHTHALIGEILAFRLGKETILLRTGWTAFDEEKTELINQTVTCHIDLILQGLSQRSL

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081783, Length=223, Percent_Identity=100, Blast_Score=461, Evalue=1e-131,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647
- InterPro:   IPR015292 [H]

Pfam domain/function: PF09209 DUF1956; PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 25438; Mature: 25438

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDCAMNNPAMTIKGEQAKKQLIAAALAQFGEYGMNATTREIAAQAGQNIAAITYYFGSKE
CCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEEEEEECCCC
DLYLACAQWIADFIGEQFRPHAEEAERLFAQPQPDRAAIRELILRACRNMIKLLTQDDTV
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
NLSKFISREQLSPTAAYHLVHEQVISPLHSHLTRLIAAWTGCDANDTRMILHTHALIGEI
CHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
LAFRLGKETILLRTGWTAFDEEKTELINQTVTCHIDLILQGLSQRSL
HHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDCAMNNPAMTIKGEQAKKQLIAAALAQFGEYGMNATTREIAAQAGQNIAAITYYFGSKE
CCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEEEEEECCCC
DLYLACAQWIADFIGEQFRPHAEEAERLFAQPQPDRAAIRELILRACRNMIKLLTQDDTV
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
NLSKFISREQLSPTAAYHLVHEQVISPLHSHLTRLIAAWTGCDANDTRMILHTHALIGEI
CHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
LAFRLGKETILLRTGWTAFDEEKTELINQTVTCHIDLILQGLSQRSL
HHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8037924; 8905232; 9278503 [H]