Definition | Shigella flexneri 2a str. 2457T, complete genome. |
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Accession | NC_004741 |
Length | 4,599,354 |
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The map label for this gene is 30062251
Identifier: 30062251
GI number: 30062251
Start: 736498
End: 737097
Strand: Direct
Name: 30062251
Synonym: S0754
Alternate gene names: NA
Gene position: 736498-737097 (Clockwise)
Preceding gene: 30062250
Following gene: 30062252
Centisome position: 16.01
GC content: 58.67
Gene sequence:
>600_bases ATGGCTCCGGAGGACTGGCTGCGGGCACAAATGCAGGGTGAGATTGTGGCACTGGTCCACAGTCATCCCGGTGGTCTGCC CTGGCTGAGTGAGGCTGACCGGCGGCTGCAGGTGCAGAGTGATTTGCCGTGGTGGCTGGTCTGCCGGGGGACGATTCACA AGTTCCGCTGTGTGCCGCATCTCACCGGGCGGCGCTTTGAGCACGGGGTGACGGACTGTTACACGCTGTTCCGGGATGCT TATCATCTGGCGGGGATTGAGATGCCGGATTTTCATCGCGGGGATGACTGGTGGCGTCACGGTCAGAATCTCTATCTGGA TAATCTGGAGGCCACAGGGCTGTATCAGGTGCCGTTGTCATCAGCACAACCGGGCGATGTGCTGCTGTGCTGTTTTGGTT CATCGGTGCCGAATCATGCCGCCATTTACTGCGGCGATGGTGAGCTGCTGCACCATATTCCTGAACAACTGAGTAAACGA GAGAGGTATACCGACAAATGGCAGCGACGCACACACTCCCTCTGGCGTCACCGGGAATGGCACGCATCTGCCTTTACGGG GATTTGCAACGATTTGGCCGCCGCATCGACCTTCGTGTGA
Upstream 100 bases:
>100_bases TGCGCCAGCGGAGTCGTGTGGCTTCGTGGTGAGAACGCCGGAGGGAGACAGGTATCTTCCCAGCGAGAATATCTCCGGTG AGCCGGAGGAACGGTTCCGG
Downstream 100 bases:
>100_bases AAACGGGGGCTGAAGCCATCCGCGCACTGGCCACACAGCTCCCGGCGTTTCGTCAGAAACTGAGTGACGGCTGGTATCAG GTGCGCATTGCCGGGCGTGA
Product: putative tail assembly protein
Products: NA
Alternate protein names: Tail Assembly Protein; Tail Assembly Protein K; Phage Minor Tail Protein; Phage Tail Assembly Protein; Prophage LambdaSo Tail Assembly Protein K; Phage Protein; Gifsy-2 Prophage Tail Assembly Protein; Tail Fiber Component K Of Prophage; Phage-Related Tail Assembly Protein K; Phage Tail Protein; Metal-Dependent Protease; Tail Assembly Protein K-Like; Tail Fiber Component K; Tail Fiber Component; NlpC/P60 Family Protein; Bacteriophage Tail Protein
Number of amino acids: Translated: 199; Mature: 198
Protein sequence:
>199_residues MAPEDWLRAQMQGEIVALVHSHPGGLPWLSEADRRLQVQSDLPWWLVCRGTIHKFRCVPHLTGRRFEHGVTDCYTLFRDA YHLAGIEMPDFHRGDDWWRHGQNLYLDNLEATGLYQVPLSSAQPGDVLLCCFGSSVPNHAAIYCGDGELLHHIPEQLSKR ERYTDKWQRRTHSLWRHREWHASAFTGICNDLAAASTFV
Sequences:
>Translated_199_residues MAPEDWLRAQMQGEIVALVHSHPGGLPWLSEADRRLQVQSDLPWWLVCRGTIHKFRCVPHLTGRRFEHGVTDCYTLFRDA YHLAGIEMPDFHRGDDWWRHGQNLYLDNLEATGLYQVPLSSAQPGDVLLCCFGSSVPNHAAIYCGDGELLHHIPEQLSKR ERYTDKWQRRTHSLWRHREWHASAFTGICNDLAAASTFV >Mature_198_residues APEDWLRAQMQGEIVALVHSHPGGLPWLSEADRRLQVQSDLPWWLVCRGTIHKFRCVPHLTGRRFEHGVTDCYTLFRDAY HLAGIEMPDFHRGDDWWRHGQNLYLDNLEATGLYQVPLSSAQPGDVLLCCFGSSVPNHAAIYCGDGELLHHIPEQLSKRE RYTDKWQRRTHSLWRHREWHASAFTGICNDLAAASTFV
Specific function: Unknown
COG id: COG0791
COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22940; Mature: 22809
Theoretical pI: Translated: 6.87; Mature: 6.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 3.5 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAPEDWLRAQMQGEIVALVHSHPGGLPWLSEADRRLQVQSDLPWWLVCRGTIHKFRCVPH CCCHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHEEEECCCCCEEEEECCHHHHHCCCCC LTGRRFEHGVTDCYTLFRDAYHLAGIEMPDFHRGDDWWRHGQNLYLDNLEATGLYQVPLS CCCCHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCEEEECCCCCEEEECCCC SAQPGDVLLCCFGSSVPNHAAIYCGDGELLHHIPEQLSKRERYTDKWQRRTHSLWRHREW CCCCCCEEEEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH HASAFTGICNDLAAASTFV HHHHHHHHHHHHHHHHCCC >Mature Secondary Structure APEDWLRAQMQGEIVALVHSHPGGLPWLSEADRRLQVQSDLPWWLVCRGTIHKFRCVPH CCHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHEEEECCCCCEEEEECCHHHHHCCCCC LTGRRFEHGVTDCYTLFRDAYHLAGIEMPDFHRGDDWWRHGQNLYLDNLEATGLYQVPLS CCCCHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCEEEECCCCCEEEECCCC SAQPGDVLLCCFGSSVPNHAAIYCGDGELLHHIPEQLSKRERYTDKWQRRTHSLWRHREW CCCCCCEEEEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH HASAFTGICNDLAAASTFV HHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA