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The map label for this gene is rzpD [H]

Identifier: 30062231

GI number: 30062231

Start: 720365

End: 720769

Strand: Direct

Name: rzpD [H]

Synonym: S0734

Alternate gene names: 30062231

Gene position: 720365-720769 (Clockwise)

Preceding gene: 30062230

Following gene: 30062232

Centisome position: 15.66

GC content: 53.33

Gene sequence:

>405_bases
ATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCATGGGCTGTTAATCATTACCG
TGATAACGCCATTACCTACAAAGAGCAGCGCGACAAAAACGCCGGAGAACTGAAGCTGGCGAACGCAACCATTACTGACA
TGCAGCAGCGCCAGCGTGATGCTGATGCACTCGATGCTAAATACACGAAGGAGTTAGCTGATGCGAAAGCTGAAAATGAT
GCTCTTCGGCGCAAGCTTGATAATGGTGGTCGGGTGCTCGTCAAAGGAAAATGCCCTGTGCCATCCTCAGCCGAAACCTC
CAGCGCCTCCGGCATGGGCAATGATGCCACCGTCGAACTCTCTCCAGTTGCTGGACGAAACGTTCTCGGTATCCGGGACG
GGTGA

Upstream 100 bases:

>100_bases
AAGATGTTGGGCGCGATTGCCGCATACGTTCAAATAACTGCTATGGACAGGTTATTCGTCGTGACCAGGAAAGCGCATTA
GCCTGTTGGGGGATAGATCA

Downstream 100 bases:

>100_bases
GGTAGCCTGAGTTTAACGGACACTCCTTCCTGAAATAGAATGGCATCAGAAGGAGCTAATAATGAGCAGAAAAACCCAAC
GTTACTCTAAAGAGTTCAAA

Product: endopeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 134; Mature: 133

Protein sequence:

>134_residues
MSRVTAIISALVICIIVCLSWAVNHYRDNAITYKEQRDKNAGELKLANATITDMQQRQRDADALDAKYTKELADAKAEND
ALRRKLDNGGRVLVKGKCPVPSSAETSSASGMGNDATVELSPVAGRNVLGIRDG

Sequences:

>Translated_134_residues
MSRVTAIISALVICIIVCLSWAVNHYRDNAITYKEQRDKNAGELKLANATITDMQQRQRDADALDAKYTKELADAKAEND
ALRRKLDNGGRVLVKGKCPVPSSAETSSASGMGNDATVELSPVAGRNVLGIRDG
>Mature_133_residues
SRVTAIISALVICIIVCLSWAVNHYRDNAITYKEQRDKNAGELKLANATITDMQQRQRDADALDAKYTKELADAKAENDA
LRRKLDNGGRVLVKGKCPVPSSAETSSASGMGNDATVELSPVAGRNVLGIRDG

Specific function: Necessary for host cell lysis. It is believed to code for an endopeptidase that cleaves the amino-carboxyl cross-link between the diaminopimelic acid and D-alanine residues in the murein component of the bacterial cell wall [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786769, Length=134, Percent_Identity=67.1641791044776, Blast_Score=142, Evalue=8e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004929 [H]

Pfam domain/function: PF03245 Phage_lysis [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 14433; Mature: 14301

Theoretical pI: Translated: 8.48; Mature: 8.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRVTAIISALVICIIVCLSWAVNHYRDNAITYKEQRDKNAGELKLANATITDMQQRQRD
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCEEECCCHHHHHHHHHHH
ADALDAKYTKELADAKAENDALRRKLDNGGRVLVKGKCPVPSSAETSSASGMGNDATVEL
HHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEE
SPVAGRNVLGIRDG
CCCCCCCEEEECCC
>Mature Secondary Structure 
SRVTAIISALVICIIVCLSWAVNHYRDNAITYKEQRDKNAGELKLANATITDMQQRQRD
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCEEECCCHHHHHHHHHHH
ADALDAKYTKELADAKAENDALRRKLDNGGRVLVKGKCPVPSSAETSSASGMGNDATVEL
HHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEE
SPVAGRNVLGIRDG
CCCCCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]