Click here to switch to the map view.

The map label for this gene is ybfA

Identifier: 30062133

GI number: 30062133

Start: 620220

End: 620426

Strand: Reverse

Name: ybfA

Synonym: S0608

Alternate gene names: 30062133

Gene position: 620426-620220 (Counterclockwise)

Preceding gene: 30062137

Following gene: 30062132

Centisome position: 13.49

GC content: 51.69

Gene sequence:

>207_bases
ATGGAACTCTACAGAGAATATCCTGCATGGCTTATCTTTTTACGCCGTACATATGCGGTTGCAGCGGGCGTTCTGGCGCT
GCCTTTCATGCTTTTCTGGAAAGACCGCGCCCGCTTTTACAGCTACCTGCACCGCGTCTGGTCGAAAACCAGCGATAAAC
CGGTGTGGATGGATCAGGCCGAAAAGGCAACCGGTGATTTTTACTGA

Upstream 100 bases:

>100_bases
AGTAGTAAAATTACACAAAAGGCGGTACTATTTTCATCAGATAAACAAATTCATTTTTCCGGTGCTATTCACCGGGTAGA
TACAAAAGGGGGAGAAAAGT

Downstream 100 bases:

>100_bases
TTGCCTGCGCGCTTAAGCCAGCCTCGTATCAGGGGGCTGGTTTAGGTGTTCAACATCAACGTCTTCCATGATAATTAACA
TGGAAGACGTTTCCATCGTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 68; Mature: 68

Protein sequence:

>68_residues
MELYREYPAWLIFLRRTYAVAAGVLALPFMLFWKDRARFYSYLHRVWSKTSDKPVWMDQAEKATGDFY

Sequences:

>Translated_68_residues
MELYREYPAWLIFLRRTYAVAAGVLALPFMLFWKDRARFYSYLHRVWSKTSDKPVWMDQAEKATGDFY
>Mature_68_residues
MELYREYPAWLIFLRRTYAVAAGVLALPFMLFWKDRARFYSYLHRVWSKTSDKPVWMDQAEKATGDFY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786916, Length=68, Percent_Identity=100, Blast_Score=141, Evalue=1e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YBFA_ECO57 (P0AAU3)

Other databases:

- EMBL:   AE005174
- EMBL:   BA000007
- PIR:   H85569
- PIR:   H90719
- RefSeq:   NP_286412.1
- RefSeq:   NP_308755.1
- ProteinModelPortal:   P0AAU3
- EnsemblBacteria:   EBESCT00000026770
- EnsemblBacteria:   EBESCT00000056396
- GeneID:   917097
- GeneID:   957782
- GenomeReviews:   AE005174_GR
- GenomeReviews:   BA000007_GR
- KEGG:   ece:Z0846
- KEGG:   ecs:ECs0728
- GeneTree:   EBGT00050000010395
- HOGENOM:   HBG416475
- OMA:   MLFRRDR
- ProtClustDB:   CLSK879725
- BioCyc:   ECOL83334:ECS0728-MONOMER
- InterPro:   IPR019663

Pfam domain/function: PF10725 DUF2517

EC number: NA

Molecular weight: Translated: 8275; Mature: 8275

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELYREYPAWLIFLRRTYAVAAGVLALPFMLFWKDRARFYSYLHRVWSKTSDKPVWMDQA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH
EKATGDFY
HCCCCCCC
>Mature Secondary Structure
MELYREYPAWLIFLRRTYAVAAGVLALPFMLFWKDRARFYSYLHRVWSKTSDKPVWMDQA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH
EKATGDFY
HCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796