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The map label for this gene is ybdH

Identifier: 30062056

GI number: 30062056

Start: 531643

End: 532731

Strand: Reverse

Name: ybdH

Synonym: S0519

Alternate gene names: 30062056

Gene position: 532731-531643 (Counterclockwise)

Preceding gene: 30062058

Following gene: 30062050

Centisome position: 11.58

GC content: 55.65

Gene sequence:

>1089_bases
ATGCCTCACAATCCTATCCGCGTGGTCGTCGGCCCGGCTAACTACTTTTCACATCCAGGAAGTTTCAATCACCTGCACAA
TTTTTTCACTGATGAACAACTTTCTCGCGCGGTGTGGATCTACGGCAAACGCGCCATTGCTGCGGCGCAAACCAAACTTC
CGCCAGCGTTTGGACTTCCAGGGGCAAAGCATATTTTGTTTCGTGGTCATTGCAGCGAAAGCGATGTACAGCAACTGGCG
GCTGAGTCCGGTGACGATCGCAGCGTGGTGATTGGCGTCGGCGGCGGCGCACTGCTCGACACCGCGAAAGCCCTCGCCCG
CCGTCTCGGTCTGCCATTTGTTGCCGCTCCGACGATCGCCGCCACCTGCGCAGCCTGGACACCGCTCTCCGTCTGGTATA
ACGATGCCGGACAGGCGCTGCATTATGAGATTTTCGACGACGCCAATTTTATGGTGCTGGTGGAACCGGAGATTATCCTC
AATGCACCGCAACAATATCTGCTGGCGGGGATCGGTGACACGCTGGCGAAATGGTATGAAGCGGTGGTGCTGGCTCCGCA
ACCAGAAACGTTGCCGCTAACCGTGCGGCTGGGGATCAATAATGCGCAGGCCATTCGCGACGTCTTGTTAAACAGTAGCG
AACAGGCACTTGCCGATCAGCAAAATCAGCAGTTAACGCAATCATTTTGCGATGTGGTGGATGCTATTATTGCTGGTGGT
GGGATGGTCGGTGGTCTGGGCGATCGTTTTACGCGTGTGGCGGCGGCTCATGCCGTGCATAACGGTCTGACTGTCCTGCC
GCAAACCGAGAAGTTTCTTCACGGCACCAAAGTCGCTTACGGAATTCTGGTGCAAAGCGCCTTGCTGGGTCAGGATGATG
TGCTGGCGCAATTAACCGGGGCGTATCAGCGTTTTCATCTGCCGACTACGCTGGCGGAGCTGGAGGTGGATATCAATAAT
CAGGCGGAGATCGACAAAGTGATTGCCCACACCTTGCGCCCGGTGGAGTCCATTCATTACCTGCCAGTCACGCTGACACC
AGATACGTTGCGTGCAGCGTTCGAAAAAGTGGAATCGTTTAAAGCCTGA

Upstream 100 bases:

>100_bases
TACCTGACGAAGTTGCGTGTTGAAGGCACTATAACACGATGCCAGTATTTGGCAATCAAGACGTTTAGATGTCTAAATAA
AACAATAAGGACAACACAAC

Downstream 100 bases:

>100_bases
CGTGCAAATTTAGCAGCAGCGCGCGCCGCCTTTTCCACCGTAGCGCGCGTCCTGCCGCTCACGGAAAAACTCCTCGTAGG
TCATCGGCGTTTGATCGGGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 362; Mature: 361

Protein sequence:

>362_residues
MPHNPIRVVVGPANYFSHPGSFNHLHNFFTDEQLSRAVWIYGKRAIAAAQTKLPPAFGLPGAKHILFRGHCSESDVQQLA
AESGDDRSVVIGVGGGALLDTAKALARRLGLPFVAAPTIAATCAAWTPLSVWYNDAGQALHYEIFDDANFMVLVEPEIIL
NAPQQYLLAGIGDTLAKWYEAVVLAPQPETLPLTVRLGINNAQAIRDVLLNSSEQALADQQNQQLTQSFCDVVDAIIAGG
GMVGGLGDRFTRVAAAHAVHNGLTVLPQTEKFLHGTKVAYGILVQSALLGQDDVLAQLTGAYQRFHLPTTLAELEVDINN
QAEIDKVIAHTLRPVESIHYLPVTLTPDTLRAAFEKVESFKA

Sequences:

>Translated_362_residues
MPHNPIRVVVGPANYFSHPGSFNHLHNFFTDEQLSRAVWIYGKRAIAAAQTKLPPAFGLPGAKHILFRGHCSESDVQQLA
AESGDDRSVVIGVGGGALLDTAKALARRLGLPFVAAPTIAATCAAWTPLSVWYNDAGQALHYEIFDDANFMVLVEPEIIL
NAPQQYLLAGIGDTLAKWYEAVVLAPQPETLPLTVRLGINNAQAIRDVLLNSSEQALADQQNQQLTQSFCDVVDAIIAGG
GMVGGLGDRFTRVAAAHAVHNGLTVLPQTEKFLHGTKVAYGILVQSALLGQDDVLAQLTGAYQRFHLPTTLAELEVDINN
QAEIDKVIAHTLRPVESIHYLPVTLTPDTLRAAFEKVESFKA
>Mature_361_residues
PHNPIRVVVGPANYFSHPGSFNHLHNFFTDEQLSRAVWIYGKRAIAAAQTKLPPAFGLPGAKHILFRGHCSESDVQQLAA
ESGDDRSVVIGVGGGALLDTAKALARRLGLPFVAAPTIAATCAAWTPLSVWYNDAGQALHYEIFDDANFMVLVEPEIILN
APQQYLLAGIGDTLAKWYEAVVLAPQPETLPLTVRLGINNAQAIRDVLLNSSEQALADQQNQQLTQSFCDVVDAIIAGGG
MVGGLGDRFTRVAAAHAVHNGLTVLPQTEKFLHGTKVAYGILVQSALLGQDDVLAQLTGAYQRFHLPTTLAELEVDINNQ
AEIDKVIAHTLRPVESIHYLPVTLTPDTLRAAFEKVESFKA

Specific function: Unknown

COG id: COG0371

COG function: function code C; Glycerol dehydrogenase and related enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron-containing alcohol dehydrogenase family [H]

Homologues:

Organism=Escherichia coli, GI1786815, Length=362, Percent_Identity=98.8950276243094, Blast_Score=734, Evalue=0.0,
Organism=Escherichia coli, GI87082352, Length=359, Percent_Identity=32.033426183844, Blast_Score=152, Evalue=4e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001670
- InterPro:   IPR018211
- InterPro:   IPR016205 [H]

Pfam domain/function: PF00465 Fe-ADH [H]

EC number: 1.1.-.- [C]

Molecular weight: Translated: 39048; Mature: 38917

Theoretical pI: Translated: 5.87; Mature: 5.87

Prosite motif: PS00913 ADH_IRON_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPHNPIRVVVGPANYFSHPGSFNHLHNFFTDEQLSRAVWIYGKRAIAAAQTKLPPAFGLP
CCCCCEEEEECCHHHCCCCCCHHHHHHHCCHHHHHCEEEEECCHHHHHHHHCCCCCCCCC
GAKHILFRGHCSESDVQQLAAESGDDRSVVIGVGGGALLDTAKALARRLGLPFVAAPTIA
CCCEEEEECCCCHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCEEECCHHH
ATCAAWTPLSVWYNDAGQALHYEIFDDANFMVLVEPEIILNAPQQYLLAGIGDTLAKWYE
HHHHCCCCCEEEECCCCCEEEEEEECCCCEEEEECCHHEECCCHHHHHHHHHHHHHHHHH
AVVLAPQPETLPLTVRLGINNAQAIRDVLLNSSEQALADQQNQQLTQSFCDVVDAIIAGG
EEEECCCCCCEEEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
GMVGGLGDRFTRVAAAHAVHNGLTVLPQTEKFLHGTKVAYGILVQSALLGQDDVLAQLTG
CCCCCCHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
AYQRFHLPTTLAELEVDINNQAEIDKVIAHTLRPVESIHYLPVTLTPDTLRAAFEKVESF
HHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCEEEEEEECHHHHHHHHHHHHHC
KA
CC
>Mature Secondary Structure 
PHNPIRVVVGPANYFSHPGSFNHLHNFFTDEQLSRAVWIYGKRAIAAAQTKLPPAFGLP
CCCCEEEEECCHHHCCCCCCHHHHHHHCCHHHHHCEEEEECCHHHHHHHHCCCCCCCCC
GAKHILFRGHCSESDVQQLAAESGDDRSVVIGVGGGALLDTAKALARRLGLPFVAAPTIA
CCCEEEEECCCCHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCEEECCHHH
ATCAAWTPLSVWYNDAGQALHYEIFDDANFMVLVEPEIILNAPQQYLLAGIGDTLAKWYE
HHHHCCCCCEEEECCCCCEEEEEEECCCCEEEEECCHHEECCCHHHHHHHHHHHHHHHHH
AVVLAPQPETLPLTVRLGINNAQAIRDVLLNSSEQALADQQNQQLTQSFCDVVDAIIAGG
EEEECCCCCCEEEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
GMVGGLGDRFTRVAAAHAVHNGLTVLPQTEKFLHGTKVAYGILVQSALLGQDDVLAQLTG
CCCCCCHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
AYQRFHLPTTLAELEVDINNQAEIDKVIAHTLRPVESIHYLPVTLTPDTLRAAFEKVESF
HHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCEEEEEEECHHHHHHHHHHHHHC
KA
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1848300; 7567469 [H]