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The map label for this gene is yccF

Identifier: 30023981

GI number: 30023981

Start: 226054

End: 226368

Strand: Direct

Name: yccF

Synonym: L26054

Alternate gene names: 30023981

Gene position: 226054-226368 (Clockwise)

Preceding gene: 30023980

Following gene: 15672207

Centisome position: 9.56

GC content: 34.6

Gene sequence:

>315_bases
ATGGAAATGAACGGAAAACAAAAACGCTACTTGCGTAGCTTGGCAGTTAATATTAAACCAATTGTTCAAATTGGCAAAAG
TGGTTTGTCTAATGAAATTTTGACAAGCATTCGTAATGCTGCTGATGCACGTGAACTAATCAAAGTTAATATTTTACAAA
ACTCAGATGAAGTGGCAACAGATGTGGCAGAAGCAATTGAAGAAATGGGACTTGATGTGGTTCAAATCATCGGTCGAAAT
CTCATTGTGTTTAAAGTTTCTGACCGCAAAGAAAATCGCAAAATTTCGGTTGAAGTTAAAAATATTGTGAAATAA

Upstream 100 bases:

>100_bases
TCTGATTAAAGGATTGATTGCGCCTGAATTGAGTTGGAAATTACCCAATAACTAAAGGTTGCTCGGAAATTTTAAAAATA
GAAATAGGAAAAATTAAATC

Downstream 100 bases:

>100_bases
AGTGTTCTAAAAAATAATCAAAGACTAAGATATAATGGGTGAACAAATGGTAATAGATTTATTGACTCCTTTTACAAAGG
TAGAATTAAAAGCTAAAGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 104; Mature: 104

Protein sequence:

>104_residues
MEMNGKQKRYLRSLAVNIKPIVQIGKSGLSNEILTSIRNAADARELIKVNILQNSDEVATDVAEAIEEMGLDVVQIIGRN
LIVFKVSDRKENRKISVEVKNIVK

Sequences:

>Translated_104_residues
MEMNGKQKRYLRSLAVNIKPIVQIGKSGLSNEILTSIRNAADARELIKVNILQNSDEVATDVAEAIEEMGLDVVQIIGRN
LIVFKVSDRKENRKISVEVKNIVK
>Mature_104_residues
MEMNGKQKRYLRSLAVNIKPIVQIGKSGLSNEILTSIRNAADARELIKVNILQNSDEVATDVAEAIEEMGLDVVQIIGRN
LIVFKVSDRKENRKISVEVKNIVK

Specific function: Unknown

COG id: COG1534

COG function: function code J; Predicted RNA-binding protein containing KH domain, possibly ribosomal protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CRM domain [H]

Homologues:

Organism=Escherichia coli, GI1789570, Length=98, Percent_Identity=38.7755102040816, Blast_Score=67, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001890
- InterPro:   IPR017924
- ProDom:   PD010559 [H]

Pfam domain/function: PF01985 CRS1_YhbY [H]

EC number: NA

Molecular weight: Translated: 11632; Mature: 11632

Theoretical pI: Translated: 10.06; Mature: 10.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEMNGKQKRYLRSLAVNIKPIVQIGKSGLSNEILTSIRNAADARELIKVNILQNSDEVAT
CCCCCHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
DVAEAIEEMGLDVVQIIGRNLIVFKVSDRKENRKISVEVKNIVK
HHHHHHHHCCHHHHHHHCCCEEEEEECCCCCCCEEEEEHHCCCC
>Mature Secondary Structure
MEMNGKQKRYLRSLAVNIKPIVQIGKSGLSNEILTSIRNAADARELIKVNILQNSDEVAT
CCCCCHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
DVAEAIEEMGLDVVQIIGRNLIVFKVSDRKENRKISVEVKNIVK
HHHHHHHHCCHHHHHHHCCCEEEEEECCCCCCCEEEEEHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]