| Definition | Bacteroides thetaiotaomicron VPI-5482 chromosome, complete genome. |
|---|---|
| Accession | NC_004663 |
| Length | 6,260,361 |
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The map label for this gene is 29349707
Identifier: 29349707
GI number: 29349707
Start: 5665786
End: 5667273
Strand: Reverse
Name: 29349707
Synonym: BT_4299
Alternate gene names: NA
Gene position: 5667273-5665786 (Counterclockwise)
Preceding gene: 29349708
Following gene: 29349706
Centisome position: 90.53
GC content: 42.94
Gene sequence:
>1488_bases ATGCGAAAAAGAAGAGTTTATTGGACGCTGTTCATTACAGCTTTCGCGTGGTTAGCTTCCTGTTCAGATGACGACATCAA TGGAAGCAGCGGGTTCAACCCAAACCAGCCTATTGAGATCACAGAATTTTATCCTGATTCCGGAGGTATAGCCACTCCGA TGATCATCGAAGGCCGCAACTTCGGTACAGACACCACTGGCATGAAAGTCTATTTTGAAGATGTAGACGGGATCAGACAT CCTGCCGGATTAGTCAGCAGTAACGGTAGCAGAATCTATGCATTTGTTCCCAAAGGACTCACCTTCAAAAGAGAGATGAA TATTCTTGTAGAAAGAAGAACGCCCGACGGTCAAGAATACATAGGCAAAGCACCAGACCAATTCCTATACAAGACACAAA CCAGTGTTAGTACGGTAGCAGGACTTGCATCACCGGACAATAATATAAACACCGTTGGTGGTGACCTTGCCACATGTACT TTCTCCTCTCCTTTCTATCTCTGTATAGACGGTGAAGACAATATATTTGTGGTAGACCGTAAAGGAGACAGTGGAAAAGA CAAACAACCAAACACAACCTGCCGTAATGAAAAAGGTGAAGGCGTAAACGGAAACATTTCAATGATTTCCATCGCCAGCA ATTCTTCCATTGTATTAAAATATGGAACTGCATATATTAATGCACCTGCTTATTCTGATGAAAAAGATGCTGAAGCTGTT TACATTCCGGATGATGCCGGCATGAAATATTATGATATGCAAAAACTTCTAAATTATGTTCCCCGATATAGAACAGTCTT GAAATCAGAAGAACTCAGCACCGTAGACGAAAACAACTGGAAGCATTGCTTTGTAATCAACAAGCTGGATCATATGATCT ATACGGTCATGTGGAAAGGGCAATTGGTTCGAATCAATCCTAAAAACCGTACAGCAGAAATTTTGCTAAAGAAAATATCT AATGTAGCAACAGGCGACGGCGGCAAAGCAGGAAGTGACTCCTATATCGCATTCAGCCCTATTAAAGGAGAAGAAAACGT ACTCTATGTATCTCTTGCAGATTTTCACCAGATTTGGAGAGTGGACGTATCCAAGATCACTCCGGAAGATAAAGACACTT ATAACGGAGAATCATACGCAGGAAAAGCAATCTACGAAGGAGTTATGAACGGGAAGGGCTGGGAAGACGGCTTGCTGAAG AACGCCAAATTCAGACACCCGCGCCAGATTTGTTTCACCGACGACGGAAAAATGTACATTGCTGACAGTGGTAATTCCTG CATCCGCGTAATAGATACTACTATGCCGAAAGAAAGAGCAGCCGTAACCACACCTATCGGTCTGCCGGGAGCGGAAGGTT ATAAGGATGGAGGTCCGGAAATTGCCAAATTCCACTTCCCTTGCGGAGTAGCAGTCAACAGTGATGGAACTATTGTATAT GTAGCCGACACACAGAACAAAGTGATTCGTAAATTATCCATTGAATAA
Upstream 100 bases:
>100_bases CATACCCTAGTTCTACCCACATAGTAGACACACAAGAGTAGGTTTCCCTATCACTTTTTTTTAACCAATCTAATTATTAA CCTTTTATCACAGAAAAACA
Downstream 100 bases:
>100_bases CCTTATACAAAATACAATATGAGAAATAATTTTCTACTGATTGTACTGATCATGGCGCTTATACCGCTGACGAGTTACAG TCAAGACAATAAGAAAAAAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 495; Mature: 495
Protein sequence:
>495_residues MRKRRVYWTLFITAFAWLASCSDDDINGSSGFNPNQPIEITEFYPDSGGIATPMIIEGRNFGTDTTGMKVYFEDVDGIRH PAGLVSSNGSRIYAFVPKGLTFKREMNILVERRTPDGQEYIGKAPDQFLYKTQTSVSTVAGLASPDNNINTVGGDLATCT FSSPFYLCIDGEDNIFVVDRKGDSGKDKQPNTTCRNEKGEGVNGNISMISIASNSSIVLKYGTAYINAPAYSDEKDAEAV YIPDDAGMKYYDMQKLLNYVPRYRTVLKSEELSTVDENNWKHCFVINKLDHMIYTVMWKGQLVRINPKNRTAEILLKKIS NVATGDGGKAGSDSYIAFSPIKGEENVLYVSLADFHQIWRVDVSKITPEDKDTYNGESYAGKAIYEGVMNGKGWEDGLLK NAKFRHPRQICFTDDGKMYIADSGNSCIRVIDTTMPKERAAVTTPIGLPGAEGYKDGGPEIAKFHFPCGVAVNSDGTIVY VADTQNKVIRKLSIE
Sequences:
>Translated_495_residues MRKRRVYWTLFITAFAWLASCSDDDINGSSGFNPNQPIEITEFYPDSGGIATPMIIEGRNFGTDTTGMKVYFEDVDGIRH PAGLVSSNGSRIYAFVPKGLTFKREMNILVERRTPDGQEYIGKAPDQFLYKTQTSVSTVAGLASPDNNINTVGGDLATCT FSSPFYLCIDGEDNIFVVDRKGDSGKDKQPNTTCRNEKGEGVNGNISMISIASNSSIVLKYGTAYINAPAYSDEKDAEAV YIPDDAGMKYYDMQKLLNYVPRYRTVLKSEELSTVDENNWKHCFVINKLDHMIYTVMWKGQLVRINPKNRTAEILLKKIS NVATGDGGKAGSDSYIAFSPIKGEENVLYVSLADFHQIWRVDVSKITPEDKDTYNGESYAGKAIYEGVMNGKGWEDGLLK NAKFRHPRQICFTDDGKMYIADSGNSCIRVIDTTMPKERAAVTTPIGLPGAEGYKDGGPEIAKFHFPCGVAVNSDGTIVY VADTQNKVIRKLSIE >Mature_495_residues MRKRRVYWTLFITAFAWLASCSDDDINGSSGFNPNQPIEITEFYPDSGGIATPMIIEGRNFGTDTTGMKVYFEDVDGIRH PAGLVSSNGSRIYAFVPKGLTFKREMNILVERRTPDGQEYIGKAPDQFLYKTQTSVSTVAGLASPDNNINTVGGDLATCT FSSPFYLCIDGEDNIFVVDRKGDSGKDKQPNTTCRNEKGEGVNGNISMISIASNSSIVLKYGTAYINAPAYSDEKDAEAV YIPDDAGMKYYDMQKLLNYVPRYRTVLKSEELSTVDENNWKHCFVINKLDHMIYTVMWKGQLVRINPKNRTAEILLKKIS NVATGDGGKAGSDSYIAFSPIKGEENVLYVSLADFHQIWRVDVSKITPEDKDTYNGESYAGKAIYEGVMNGKGWEDGLLK NAKFRHPRQICFTDDGKMYIADSGNSCIRVIDTTMPKERAAVTTPIGLPGAEGYKDGGPEIAKFHFPCGVAVNSDGTIVY VADTQNKVIRKLSIE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54741; Mature: 54741
Theoretical pI: Translated: 5.57; Mature: 5.57
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKRRVYWTLFITAFAWLASCSDDDINGSSGFNPNQPIEITEFYPDSGGIATPMIIEGRN CCCCEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEECCC FGTDTTGMKVYFEDVDGIRHPAGLVSSNGSRIYAFVPKGLTFKREMNILVERRTPDGQEY CCCCCCCEEEEEECCCCCCCCCCCEECCCCEEEEECCCCCEEEEEEEEEEEECCCCCHHH IGKAPDQFLYKTQTSVSTVAGLASPDNNINTVGGDLATCTFSSPFYLCIDGEDNIFVVDR HCCCCHHHEEECCCCHHHHHCCCCCCCCCEECCCCEEEEEECCCEEEEEECCCCEEEEEC KGDSGKDKQPNTTCRNEKGEGVNGNISMISIASNSSIVLKYGTAYINAPAYSDEKDAEAV CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCEEEECCCCCCCCCCCEE YIPDDAGMKYYDMQKLLNYVPRYRTVLKSEELSTVDENNWKHCFVINKLDHMIYTVMWKG EECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEEECC QLVRINPKNRTAEILLKKISNVATGDGGKAGSDSYIAFSPIKGEENVLYVSLADFHQIWR EEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEHHHHHHHE VDVSKITPEDKDTYNGESYAGKAIYEGVMNGKGWEDGLLKNAKFRHPRQICFTDDGKMYI EEHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHCCCCCCCCCEEEEECCCCEEE ADSGNSCIRVIDTTMPKERAAVTTPIGLPGAEGYKDGGPEIAKFHFPCGVAVNSDGTIVY EECCCCEEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCEEEEECCCEEEECCCCEEEE VADTQNKVIRKLSIE EECCCCHHHHEECCC >Mature Secondary Structure MRKRRVYWTLFITAFAWLASCSDDDINGSSGFNPNQPIEITEFYPDSGGIATPMIIEGRN CCCCEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEECCC FGTDTTGMKVYFEDVDGIRHPAGLVSSNGSRIYAFVPKGLTFKREMNILVERRTPDGQEY CCCCCCCEEEEEECCCCCCCCCCCEECCCCEEEEECCCCCEEEEEEEEEEEECCCCCHHH IGKAPDQFLYKTQTSVSTVAGLASPDNNINTVGGDLATCTFSSPFYLCIDGEDNIFVVDR HCCCCHHHEEECCCCHHHHHCCCCCCCCCEECCCCEEEEEECCCEEEEEECCCCEEEEEC KGDSGKDKQPNTTCRNEKGEGVNGNISMISIASNSSIVLKYGTAYINAPAYSDEKDAEAV CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECCEEEECCCCCCCCCCCEE YIPDDAGMKYYDMQKLLNYVPRYRTVLKSEELSTVDENNWKHCFVINKLDHMIYTVMWKG EECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEEECC QLVRINPKNRTAEILLKKISNVATGDGGKAGSDSYIAFSPIKGEENVLYVSLADFHQIWR EEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEHHHHHHHE VDVSKITPEDKDTYNGESYAGKAIYEGVMNGKGWEDGLLKNAKFRHPRQICFTDDGKMYI EEHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHCCCCCCCCCEEEEECCCCEEE ADSGNSCIRVIDTTMPKERAAVTTPIGLPGAEGYKDGGPEIAKFHFPCGVAVNSDGTIVY EECCCCEEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCEEEEECCCEEEECCCCEEEE VADTQNKVIRKLSIE EECCCCHHHHEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA