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The map label for this gene is pyrF [H]

Identifier: 29349617

GI number: 29349617

Start: 5546012

End: 5546836

Strand: Reverse

Name: pyrF [H]

Synonym: BT_4209

Alternate gene names: 29349617

Gene position: 5546836-5546012 (Counterclockwise)

Preceding gene: 29349618

Following gene: 29349616

Centisome position: 88.6

GC content: 45.09

Gene sequence:

>825_bases
ATGAATAAACAACAGCTATTTGAAAACATAAAACGCAAGAAATCATTCCTTTGCGTAGGGCTTGATACCGACATCAAGAA
GATTCCCGAACACCTGTTGAAAGAAGAAGATCCGATCTTCGCATTCAACAAAGCGATTATCGACGCAACAGCCGATCTGT
GTATCGCTTACAAACCTAATCTCGCTTTTTACGAAAGTATGGGCGTGAAGGGCTGGATCGCATTTGAGAAAACAGTAAAA
TACATCAAGGAAAACTATCCCGACCAGTTTATTATTGCCGACGCCAAACGTGGCGACATCGGAAACACTTCTGCCATGTA
TGCCCGTACTTTCTTCGAAGAGCTGGAGATAGATTCCGTCACTGTAGCTCCTTATATGGGTGAAGACAGCGTAACTCCGT
TCCTTACTTACGAAGGCAAATGGGTGATCTTACTGGCACTGACTTCTAATAAAGGTTCCCACGACTTCCAGTTGACAGAA
GATGCAAACGGCGAACGTCTTTTCGAAAAAGTACTACGCAAATCGCAGGAATGGGCAAATGACGAACGTATGATGTACGT
AGTCGGCGCTACTCAAGGACGTGCTTTTGAAGATATTCGTAAGATTGTTCCCAACCACTTCCTGCTCGTTCCCGGTGTCG
GAGCGCAAGGCGGTTCGCTCGAAGAAGTTTGCAAATATGGAATGAACAGTACCTGTGGCCTGATTGTTAACTCTTCCCGT
GGAATCATCTACGTTGATAAAACAGAAAAGTTTGCCGAAGCTGCAAGGCTTGCCGCCCAAGAAGTACAGGTGCAAATGGC
AGAGCAACTGAAAGCGATTCTTTAA

Upstream 100 bases:

>100_bases
TTTATGGACGGAGATATTCAAGATTGTATCGATCACCTGATCGTGGCAGAAAATGCGGAACGCCTGAAAGAAAGTGAACT
CTAAAAATTATAGTATAGAC

Downstream 100 bases:

>100_bases
AGAGAAGGAATGCCTTACGAAAGAAAGATAATCAACGATCCGGTATTCGGATTCATTAATATCCCAAAGGGGTTACTGTA
CGATATTGTACGGCATCCCC

Product: orotidine 5'-phosphate decarboxylase

Products: NA

Alternate protein names: OMP decarboxylase; OMPDCase; OMPdecase [H]

Number of amino acids: Translated: 274; Mature: 274

Protein sequence:

>274_residues
MNKQQLFENIKRKKSFLCVGLDTDIKKIPEHLLKEEDPIFAFNKAIIDATADLCIAYKPNLAFYESMGVKGWIAFEKTVK
YIKENYPDQFIIADAKRGDIGNTSAMYARTFFEELEIDSVTVAPYMGEDSVTPFLTYEGKWVILLALTSNKGSHDFQLTE
DANGERLFEKVLRKSQEWANDERMMYVVGATQGRAFEDIRKIVPNHFLLVPGVGAQGGSLEEVCKYGMNSTCGLIVNSSR
GIIYVDKTEKFAEAARLAAQEVQVQMAEQLKAIL

Sequences:

>Translated_274_residues
MNKQQLFENIKRKKSFLCVGLDTDIKKIPEHLLKEEDPIFAFNKAIIDATADLCIAYKPNLAFYESMGVKGWIAFEKTVK
YIKENYPDQFIIADAKRGDIGNTSAMYARTFFEELEIDSVTVAPYMGEDSVTPFLTYEGKWVILLALTSNKGSHDFQLTE
DANGERLFEKVLRKSQEWANDERMMYVVGATQGRAFEDIRKIVPNHFLLVPGVGAQGGSLEEVCKYGMNSTCGLIVNSSR
GIIYVDKTEKFAEAARLAAQEVQVQMAEQLKAIL
>Mature_274_residues
MNKQQLFENIKRKKSFLCVGLDTDIKKIPEHLLKEEDPIFAFNKAIIDATADLCIAYKPNLAFYESMGVKGWIAFEKTVK
YIKENYPDQFIIADAKRGDIGNTSAMYARTFFEELEIDSVTVAPYMGEDSVTPFLTYEGKWVILLALTSNKGSHDFQLTE
DANGERLFEKVLRKSQEWANDERMMYVVGATQGRAFEDIRKIVPNHFLLVPGVGAQGGSLEEVCKYGMNSTCGLIVNSSR
GIIYVDKTEKFAEAARLAAQEVQVQMAEQLKAIL

Specific function: Unknown

COG id: COG0284

COG function: function code F; Orotidine-5'-phosphate decarboxylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OMP decarboxylase family. Type 2 subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011995
- InterPro:   IPR001754
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00215 OMPdecase [H]

EC number: =4.1.1.23 [H]

Molecular weight: Translated: 30881; Mature: 30881

Theoretical pI: Translated: 5.10; Mature: 5.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKQQLFENIKRKKSFLCVGLDTDIKKIPEHLLKEEDPIFAFNKAIIDATADLCIAYKPN
CCHHHHHHHHHHHHCEEEEECCCHHHHHHHHHHCCCCCEEEHHHHHHHCCCCEEEEECCC
LAFYESMGVKGWIAFEKTVKYIKENYPDQFIIADAKRGDIGNTSAMYARTFFEELEIDSV
CHHHHHCCCCEEEHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCE
TVAPYMGEDSVTPFLTYEGKWVILLALTSNKGSHDFQLTEDANGERLFEKVLRKSQEWAN
EEEEECCCCCCCEEEEECCCEEEEEEEECCCCCCCEEECCCCCHHHHHHHHHHHHHHCCC
DERMMYVVGATQGRAFEDIRKIVPNHFLLVPGVGAQGGSLEEVCKYGMNSTCGLIVNSSR
CCEEEEEEECCCCCHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHCCCCCCEEEEEECCC
GIIYVDKTEKFAEAARLAAQEVQVQMAEQLKAIL
CEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNKQQLFENIKRKKSFLCVGLDTDIKKIPEHLLKEEDPIFAFNKAIIDATADLCIAYKPN
CCHHHHHHHHHHHHCEEEEECCCHHHHHHHHHHCCCCCEEEHHHHHHHCCCCEEEEECCC
LAFYESMGVKGWIAFEKTVKYIKENYPDQFIIADAKRGDIGNTSAMYARTFFEELEIDSV
CHHHHHCCCCEEEHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCE
TVAPYMGEDSVTPFLTYEGKWVILLALTSNKGSHDFQLTEDANGERLFEKVLRKSQEWAN
EEEEECCCCCCCEEEEECCCEEEEEEEECCCCCCCEEECCCCCHHHHHHHHHHHHHHCCC
DERMMYVVGATQGRAFEDIRKIVPNHFLLVPGVGAQGGSLEEVCKYGMNSTCGLIVNSSR
CCEEEEEEECCCCCHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHCCCCCCEEEEEECCC
GIIYVDKTEKFAEAARLAAQEVQVQMAEQLKAIL
CEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA